Strain | Pseudomonas mosselii DSM 17497 Q380DRAFT_scaffold00023.23_C, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CTCTTCTTCTGGCAACGCGGCCCCTGGCCCAAACGCCGAAGAAGGAATTGCCATCGTGGGGAAACCAGAAAAAGGCAAGATCTGTCACCTCCTGCTGCTC GGTTGCGCGTTGGGGTCCAGCTTCAGCCTGCCTGTCCAGGCAGACAACGGCATCGTCGTGATCACTCGCGAGGTGCAGACCCGCAGTGCGATCCGCGCGC CCATGATCCCCGACCCGAATCCAGTCACCGTCAACACTAACCCGTCCGCGCACATTCTCAGGCAGACCAGTGAGCTGAGCGATGGCGACTTCGCCGGCAT CACCAGCGGTGCAGGGATCAACTCGCTGATCACCCAGCAGACCAATACCATCGGCGCCAACATCGGCAACCAGACCCAGTTGCCCAACATCGCCGGCGGA CGTGGCTCGGGCTCGGGCGGCAACGGTATCGCCAACATGGTCAATTCGAACGTCCAGCAAGGCCTGGGCGCCCTGAAGATCCTCAACGGGGGCCAGTAAC
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DNA Sequence for Gene |
>Q380_RS0119790
ATGAGGCATTCGCTGCTGATCCTGGCCACGCTGTGCAGTGCTTCGGCCTTCGCCCAATCCCCCGTGATCAACAACGCCACCATTGACAGCTCGGGCGCGC AATACCAAGGCAACCTTGGGGTCAACCAGGCGGCCGGCGACCAACAGCAACAGGTCAACGCCCGGGCCATCGCCATTGGCCACGACGCCAACGCCAGCAC GCAGATCCGCCAGCGCCTGCGCACCCAGGTCGATCCTTCGATGGACGCGCAGTCCAGCATCCAGGGCACGGCCTTCAGTCACGGCAACGGCATCCTCGGT GTCAACCAGAGCGCCGGCGCCAGCAACCAACAAGCCAACGCACTGCGCATCAGCGTCAGTGCCCAGCCGCAAAGCATCGACGACAGCGTCCTTCTGCAAC AGAACGTGGCGCTGATCAACAACTCGGATCCAACTGCCCAGACACCCGGCCATCGCCAGGTCAGCATCAGCGACCAGGCATTCACCGGTAGCCGTGGCGT GGTGCAGTTGAATCAGAGTGCAGGGGTGGGAAACCGAACGGCCAACACCCTGAGCATCCGGGTCGCGGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CCCAAACAGGTAACAACAACACTTAACCTAAAATAAAGGTTCTTCGCGGAGTCTGGGGGAAGAGCGAGTTGACAGTCAGGGAAGCAGGTAAATTGGCAGT CGCCAAACACACCCTTCACCTGTCCCTGCTGTCGCCGTGCATCCTATTGATCTTGCCGCTTTCTGGCCAGGCTACGACGCCGTTACCTGTCGCCCATCTA CCGATAACACCCTCCTCATTGAGCTTGAACCTCAAGCCGGCTCTCTTCCTAAGTGCGGGCGTTGTGGCCAGTTCAGCCCGTTGATTCACGATCGCCGGAT TCGTCTGGTGCGTGATCGTGATCTGTTCGATCAGCGCGTCCTGCTTCAACTACCAGT
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Amino Acid Sequence |
>autotransporter adhesin
MRHSLLILATLCSASAFAQSPVINNATIDSSGAQYQGNLGVNQAAGDQQQQVNARAIAIGHDANASTQIRQRLRTQVDPSMDAQSSIQGTAFSHGNGILG VNQSAGASNQQANALRISVSAQPQSIDDSVLLQQNVALINNSDPTAQTPGHRQVSISDQAFTGSRGVVQLNQSAGVGNRTANTLSIRVAD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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