Pseudomonas mosselii DSM 17497, Q380_RS0118860
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mosselii DSM 17497 Q380DRAFT_scaffold00022.22_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCACCAATCGGGACCTGCCGATGGCGCTGGGCCTGGGCGATATCAATGTCATCAACCAGGCCACCGCGCCGTTGATCCGCTACCGCAACATCTGCCTGC CGACCCGTCCGTACCGCCCGGTGCTGGATGGTCAGTTGCAGTGGACACTCATCTCCAACCTCTCGCTCAACTACCTGTCGCTGCTCTCGGCCGCCCCGCT CAAGGCGGTGATCGGCGCCTACGATTTCGCCGCCCTGCACGACATCCAGCAGGCCAGGACCACGCGCAAGCGCCTGGACGGCATCGGCGAGGCGCACACC GAACCGCTGGACTGGTTGATCAAGGGCCTGCCCATTCGCGGCCTGCGTACCCGCCTGCGGCTCGACCAGAAGGCTTTTCTCTGCGAAGGCGATCTGTACC TGTTCGGCTGCGTGCTGTCCCACTTCTTCGCCCTCTACGCGAGCATCAACTCCTTCCACCAGCTGGAAGTGATCAATACCACCAACAACGAGCACTACAC
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| DNA Sequence for Gene |
>Q380_RS0118860
ATGGCCACTGCTGACCGGCAGACAACCGCTGATCTAGCCGAAACGCTGCTCGCCGAGGCTCACCGGCACAGTTTCTTCCAACTGCTGGAACGGCTGCATG GCTTGCACGGTGACGACCTCGAGCCGCGCTGGCCAGATACCGCCACACGCCAGCGCGTGCACCTTGCCAGCGACCCGCGGCTCAGCTTTCCAGTGGCCGA TGTGCTGGCCGCCGAGCGGATCGCCGAGACGCCGTCGCGCTATCGCGTGCGCACCACCTTCCTGGGGCTGCACGGCACCGACTCGCCCCTGCCCAGCTAC TACCTCGACGAACTGGCCTACGAATACGCCCAGGGCATTGGCGCGCGCCCCGCGCTGTTCGATTTCTTCAACCACTGCCTGCTCAGCCTGTTGCACCGCA TCTGGCGCAAATACCGCTACTACGTGCGTTTCCAGACCGGGGCAAGCGATGACTTCTCGCGCTACGCCTTCGCCCTGATCGGCCTCGCCGACGAACGTCT GCGTGGCGACACGCCGTTGCCCTGGAGCCGCCTGCTGAGTTTCGTCGGCGTCATTGCCAGCCGCAGCCGGGCACCCGGTGTGGTCGCCGGGATCATTGCC CACTGCTTCGATCTGCCGTCGGTGCAAATCCGCGAGTTCGAGACCCGCACGGTGACCATCTCACACCGCCAGGTGGTGCGCCTGGGCCGCTGCAATGGGC AACTGGGCGAGAGCTTCATGCTCGGCGACCGCACGCGAACCCGCAGCAGCAAGTTCACCTTGCTGATCGGCGACCTCGACCTGGCACGCCTGCGCAGCCT GCTGCCCGGCGGCGTCGACTTCGAGCGACTGCGTGCACTGATCGATTTCCTGCTCCGCGACGGCCTGGCCTATGACCTCGAGCTGCGCCTGAAACCCCGT GAACTGCCACCGTTCCGCCTGCACCGCGAGCAGGGTGCGCACCTGGGCTGGACCAGCTTCATCGAAGACCGCAAGGGTGAAGTCAGCCCGATCGTGCGGA TACGGGGGCGCGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCAGACTCGCCCTCAGCATCGACAATCTTGATCGCCTGCACCACGGCGTCGTCGCGGGCCATCTGTTCGACCGCGATGGCGGCATCATCGGCAGCCACAA GGCCGACTGGTTGCTGCTGGATCGCGAGCGGCGGATTCACCCCGCCCATTGTGCGATCCGCTGGCTGGAGGGCGGCTTCTGCGTGATCGACCTCTGTGGC CAGACCCTGCTCAACGACAGCCCGCTGCCGCCCGGCCCCGACGTGCCGGTGCGCGTGGGCGATGGCGACTGCTTGCAGGTCGGCCCCTATCAACTGCACG CCCGCTATCAAGCCGGGCCAAGCGATCAAAGCTTTATCCGCGGCAACCTGGATGACCTGCTCAAGCCTGGCCGGCAGGCGCTCGCAGCGCTGCTGGACAG CTCGTTGGCCAGCCCCTGGCATCCCGTGCCCCGTACAGCGAGTCTCCCGGTCGATATCTGCACGCTGTTCGATCGACTGCAGGCCCCGGATCCCCTGGCC
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| Amino Acid Sequence |
>type VI secretion protein
MATADRQTTADLAETLLAEAHRHSFFQLLERLHGLHGDDLEPRWPDTATRQRVHLASDPRLSFPVADVLAAERIAETPSRYRVRTTFLGLHGTDSPLPSY YLDELAYEYAQGIGARPALFDFFNHCLLSLLHRIWRKYRYYVRFQTGASDDFSRYAFALIGLADERLRGDTPLPWSRLLSFVGVIASRSRAPGVVAGIIA HCFDLPSVQIREFETRTVTISHRQVVRLGRCNGQLGESFMLGDRTRTRSSKFTLLIGDLDLARLRSLLPGGVDFERLRALIDFLLRDGLAYDLELRLKPR ELPPFRLHREQGAHLGWTSFIEDRKGEVSPIVRIRGRA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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