Pseudomonas mosselii DSM 17497, Q380_RS0105440
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mosselii DSM 17497 Q380DRAFT_scaffold00004.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGCGCGCAACCGTGCGCCGCGGGTACAGATCGAATATGACGTCGAGCTGTACGGCGCCGAGAAGAAGGTCCAGCTGCCCTTCGTCATGGGCGTGCTCT CGGACCTCGCCGGCAAGCCCGCCGAGCCGCTGCCGGCCGTGGCCGACCGCAAGTTCCTGGAGATCGACGTCGACAACTTCGACTCGCGCCTGAAGGCCAT GAAGCCCCGCGTGGCGTTCAATGTGCCCAACGAGCTGACCGGTGAAGGCAACCTGAGCCTGGACATCACCTTCGAGAGCATGGACGACTTCAGCCCCGCC GCCGTGGCACGCAAGGTCGATGCCCTGAACCAGCTGCTCGAGGCCCGCACCCAGCTGGCCAACCTGCTGACCTACATGGACGGCAAGACCGGCGCCGAGG ACATCATCCTCAAGGCCATCAAGGACCCGGCCCTGCTCCAGGCCCTGGCCAGCGCGCCGAAACCTGCCGACACCGAGCCGAAGGCCTGAGGAGACCGACC
|
|
| DNA Sequence for Gene |
>Q380_RS0105440
ATGAACGATCCGTTGCGCGACAGCCAGGCCCCCCAGGCGGCCACCCAGGACCCGAGCGAGTTCGCCAGCCTGCTGCTGCAGGAATTCAAGCCCAAGACCG AGCGGGCCAAGGAAGCCGTCGAGAGCGCCGTGCGCACCCTCGCCGAACAGGCCCTGGCGCAGACCAGCCTGGTGTCCAACGATGCCATCGGTTCGATCGA GCAGATCATCGCCGCCATCGACGCCAAGCTCACCGCCCAGGTCAACCAGATCATCCACCACGATGACTTCCAGAAGCTGGAAAGCGCCTGGCGCGGCTTG CACTATCTGGTCAACAACACCGAGAGCGACGAGCAGCTGAAGATCCGCGTGCTCAACATCTCGAAGAACGACCTGCACAAGACCCTGAAAAAATTCAAGG GCACCGCCTGGGACCAGAGCCCGATCTTCAAGAAGCTCTACGAAGAGGAATACGGCCAGTTCGGTGGCGAACCCTACGGCTGCCTGGTGGGCGACTACTA CTTCGACCAGTCGCCACCCGATGTCGAGCTACTGGGCGAGGTATCCAAAGTTTGCGCCTCGATGCACGCGCCATTCATCTCCGCCGCTTCGCCGACGGTG ATGGGCATGGGCTCGTGGCAGGAGCTGTCCAACCCGCGCGACCTGACCAAGATCTTCACCACCCCGGAATACGCCGGCTGGCGTTCGCTGCGTGAATCGG AAGACTCGCGCTACATCGGCCTGACCATGCCGCGCTTCCTGGCGCGCCTGCCCTACGGCGCCAAGACCGACCCGGTGGAAGCGTTCGCCTTCGAGGAAGA CACCGACGGCGCCGACAGCAGCAAGTACACCTGGGCCAACGCCGCCTATGCCATGGCGGTGAACATCAACCGCTCGTTCAAGTACTACGGCTGGTGCTCG CGCATCCGCGGCGTGGAATCCGGCGGCGAAGTCGAAGGCCTGCCGGCGCACACCTTCCCCACCGACGACGGTGGCGTGGACATGAAGTGCCCGACCGAGA TCGCCATCTCCGATCGCCGCGAGGCGGAGCTGGCCAAGAACGGCTTCATGCCGCTGCTGCACAAGAAGAATACCGACTTCGCCGCCTTCATCGGTGCGCA GTCGCTGCAGAAGCCGGCCGAATACGACGACCCGGACGCCACCGCCAACGCCAACCTGGCCGCGCGCCTGCCGTACCTGTTCGCCACCTGCCGCTTCGCC CATTACCTGAAGTGCATCGTTCGCGACAAGATCGGCTCGTTCAAGGAAAAGGACGAGATGCAGCGCTGGCTGCAGGACTGGATCCTCAACTACGTCGACG GCGACCCGGCGCACTCCACCGAGACCACCAAGGCCCAGCACCCGCTGGCGGCCGCCGAAGTGGTGGTCGAGGAAGTCGAAGGCAACCCGGGTTACTACAA CTCGCGCTTCTACCTGCGCCCGCACTACCAGCTCGAAGGGCTGACCGTGTCGCTGCGCCTGGTGTCGAAGCTGCCTTCGGCCAAAGGGGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCATCGCGGGCAAGCCCGCTCCCACAGTGGGAGTGGGCTTGCCCGCGATTAGCCACTACTACCGCTAACCGACGCGAAATCCCGAGGACATCATGGCTGT AGATATTTTCATCAAGATCGGCGACATCAAGGGCGAGTCCCACGACAAGGCCCACAAGGACGAAATCGACGTCCTGAACTGGAGCTGGGGCATGTCCCAG TCCGGCAACATGCACATGGGCAGCGGCGGCGGTTCGGGCAAGGTCAACATCCAGGACCTGTCGATCACCAAGTACATCGACAAGTCCAGCCCCAACCTGA TGGCCCACTGCTCCAGCGGCAAGCACATCGACAAGGTCAAGCTGACCGTGCGCAAGGCCGGCGGTGAAAGCCAGGTCGAGTACCTGATCATCAACCTCGA AGAGGTGATCGTCAGCTCGCTGAGCACCGGCGGCTCGGGCAGCGACGACCGCCTGACCGAGAACGTGACCCTGAACTTCGCCAAGGTCACCGTCGACTAT
|
|
| Amino Acid Sequence |
>EvpB family type VI secretion protein
MNDPLRDSQAPQAATQDPSEFASLLLQEFKPKTERAKEAVESAVRTLAEQALAQTSLVSNDAIGSIEQIIAAIDAKLTAQVNQIIHHDDFQKLESAWRGL HYLVNNTESDEQLKIRVLNISKNDLHKTLKKFKGTAWDQSPIFKKLYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGEVSKVCASMHAPFISAASPTV MGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYIGLTMPRFLARLPYGAKTDPVEAFAFEEDTDGADSSKYTWANAAYAMAVNINRSFKYYGWCS RIRGVESGGEVEGLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRFA HYLKCIVRDKIGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVVVEEVEGNPGYYNSRFYLRPHYQLEGLTVSLRLVSKLPSAKGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|