Pseudomonas mosselii DSM 17497, Q380_RS0105415
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mosselii DSM 17497 Q380DRAFT_scaffold00004.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGATCGCAGCCCTGGCCATGGTGCTGCTCAGTGCCTGCAGCAAGGACAGCCCGGTCGAGCCCGCCGTTACCGACGCGGCGCCGCCGGCCACGGGTATCAC CCTGTACTTCAGCGCCGCGGCCGGGCTCAACCCCGGCGCCAGCGGCACGCCCGCGCCGGTGCGGGTGCGCATCTACGAGTTGAAGAATAGCGCCGCCTTC GCCCGCGCCGACTATTTCGCATTGGCAGAACGCGCCCAGGCGACCCTGGCCGCCGACCTGATCGACCAGGACGAGGTCCTGCTCCAGCCGGGCGAGCAAC TGCGCCTTGAGCGTCCGCTCGACCCGGCCACGCGCCAGGTCGGCCTGGTGGTCGGCTACCGCGAGGTTGACCAGGCCCAGTGGCGCAGCGTGCTGCCGGT TCCGCCCCGCGACTATCAGATCAGCCTCGATGTGCGCGCCGTGCGCAGCGCCGTGGCCACCCCACAACCTGAGCCCGCCCGCTAGGCAATCGGAGAACCC
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| DNA Sequence for Gene |
>Q380_RS0105415
ATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGGATGTTCATCACCACCCAGCACTTCCAGCAACACGACCGCTACCTGGAGAACTTCGTCGATGCTC GCAGCCGGCCGCTCCACGCCGCCGCCTGGGGCTTTTCCGAGCTGCTGGTCGACCAAGGCCTGCTGGCCCAGGGTAAGCTGGCGATCCTCAGCGCCCGTGG CCTGCTGCCGGACGGTACGCCGTTCGACATCCCGCGTGACGACCTGCCACCCGCGCCGCTGGAGATACCCGATGACCTGCGCAATGGCGTGATCTACCTG GGCCTGCCGCTCAAGCGCGCCGGTGCCCGCGATACCGTCGACGACGGTGAAGCGCCTGACGGTGCGCGCTATGTCAGCCGTATCAGCGAGGTCCGCGACG ACAACGCCCCGTTCGAGAACCGCGCGCCGTTGGCCCTGGGCAGCCGCGCCCTGCGCCTGCTGCGCGCCGAGGACGGCCTGAGCGACTATGCCGCGTTGGG TGTGGTGCGCATCCGGGAAAAGCGCGCCGACCGCGCCCTGGTGCTGGATGACGGCTACATCCCGCCGCTGCTCGACGTAACCGCCAGCAACCTGCTGTCG GGGTTCCGTGGCGAGCTGCTCGGCCTGCTGCACCAGCGCGGCGAGGCCCTGGCCGGGCGCGTGGTGGCCTCGGCCAACGGCGGTGCCTCGGAGATCGCCG ATTTCATGCTGCTGCAACTGGTCAACCGCGCCCAACCGCTGGTCGAGCACCTTAACCAACTGACGCCGCTGCACCCCGAGCGGTTGTACAGCGAGCTGGT GGCCCTGGCCGGCGAGTTCGCCACCTTCACCCGCGAAGGTCGTCGCCCCGAGGCATACCCGGTGTATCAACACGACGACCTGGCGGCCACCTTTGCACCC GTGCTGGCCGCCCTGCGCGAGGCCCTGTCGATGCTGATCGACAGCAAGGCCGTGGCCATCCCGCTGGTCGAGAAGGCCTACGGCATCCATGTCGGCATGC TGGCCGACCGCAGCCTGCTCGACAGCGCCAGCTTCGTCCTGGTAGTGCGCGCCGATGTGCCCAGCGAGACCCTGCGCAGCCGCTTCGGCCAGCAAAGCAA GATCGGCGCGGTGGAGCACATCCGCGACCTGGTCAACCTGCAGTTGCCGGGCATCGGCCTGTTGCCGCTGCCGGTGGCGCCACGGCAGATTCCGTTCCAT GCCGGCTCCACCTATTTCGAGCTCGACCGAGGCAGCGAACACTGGAAGCAGCTGCAGCATTCCGGTGGTTTCGCCTTCTACGTCGCCGGCGAGTTCCCCG GCCTGAACCTGGCCTTCTGGGCCATTCGAGGATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGCGATGCAATCGGACGATCCGTTGGCCAATGACCGCACTCAGTTCATGCCGCGCCCCGGTGGCCGTGGCCCGCAGCCGGCAACGCCAGCATCGGCGC CGCCAGCGCCGCCACTGAACGTGCCGGCCGAACCACTGGCGCCGGGCCAGGCGGTGGGCTTGAACCCGCTGGAGCAGGCGGCCGGCCCGCTGCTGGCGTT GCTCACCCGCTTGCGCAACACCATCGCCCACCCGGCACCTGCCAGCCTGCGAGCGCAGCTGCTGGCCTACCTGCGTCAGTTCGAGGAGCGCGCCGAGGCC GCCGGGGTCGCGCGCAACGAGGTGCTGCTGGCGCGCTACGCCCTGTGCACCGCGCTCGACGAGGCCGTGCTCAGCACGCCGTGGGGCAGCGCCAGCGACT GGGGCAAGCAGAGCCTGCTGATCACCGTGCACAACGAGGCCTGGGGCGGCGAGAAGGTGTTCCAACTGATGGAGCACTGCCTGCAGAGTCCGCGTGAGCG
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| Amino Acid Sequence |
>type VI secretion protein
MSWNNRVVWSEGMFITTQHFQQHDRYLENFVDARSRPLHAAAWGFSELLVDQGLLAQGKLAILSARGLLPDGTPFDIPRDDLPPAPLEIPDDLRNGVIYL GLPLKRAGARDTVDDGEAPDGARYVSRISEVRDDNAPFENRAPLALGSRALRLLRAEDGLSDYAALGVVRIREKRADRALVLDDGYIPPLLDVTASNLLS GFRGELLGLLHQRGEALAGRVVASANGGASEIADFMLLQLVNRAQPLVEHLNQLTPLHPERLYSELVALAGEFATFTREGRRPEAYPVYQHDDLAATFAP VLAALREALSMLIDSKAVAIPLVEKAYGIHVGMLADRSLLDSASFVLVVRADVPSETLRSRFGQQSKIGAVEHIRDLVNLQLPGIGLLPLPVAPRQIPFH AGSTYFELDRGSEHWKQLQHSGGFAFYVAGEFPGLNLAFWAIRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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