Strain | Pseudomonas fulva NBRC 16637 = DSM 17717 Q382DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ACCAGTGCCCGGGTTGCCAGGACCAGCTCCCAGGTCGGCATCACCGCGCTGGCTATCGTGGACAAGGCCGCGCAGCCCAGCGCCGCCACCATTACCGGCT TGCGGCCGATGCGGTCGGAAATCGGGCCTGTGACCAGCAGACCGAGCGCCAGCATGCCGGTCGAAACCGAAAGCACCAGGCTGCTCTGTGCAGCGTTGAT GCCGAACTCCTTCGACAGCAAGGGCATCATCGGTTGGACGCAGTAAAGCAGGGCAAAGGTAGCGAAGCCGCCGCTGAACAGCGCCAGCACCGTTCTCATG AAGGCCGGCGTGCCTTTTTCGATCCAGGCGTCGTTCGAGGTCATGGGCTCGGGTTCGGGTTTGGTCGCTACAAGGGCTACAGCGGTTTTCACAGGCAAGT ACCTCAGAGGCAGTGAAAAAATCATATAGCTGGCTAATAATTAGGTCCAATATATTGTTCGACCTAATTAAGACGTTTCACGACCTATGAGGGGTGGGTG
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DNA Sequence for Gene |
>Q382_RS0103495
ATGGAGCTGCGCCATTTACGCTATTTCGTCGCGGTTGCCGAAGAATTGCACTTCGGCCGGGCGGCTCAGCACCTGGGCATTTCGCAGCCGCCGCTTAGCC AGCAGATTCTGGCGCTCGAGCAAGAACTCGGGGCGCGGCTGTTCGAGCGGACCAACCGCCGTGTCGAGCTCAGCGAGGCCGGGCGACTGTTTCTGGAAGA GGCTCGCCAGGTGTTGGCGCAGGTCGAAAAGGCCGCCGATGTCGCCCGGCGCGCACAGTTGGGGGAACTGGGTGAGATGAAGATCGGCTTCACCTCCTCG GCACCGTTCACCTCCAAAATTCCCAAGGCGATTCATGCATTCCGGCAGCGCTTTCCTGCCGTGCACCTGAACCTCATGGAAATGAGCAGCCGCGAAGTGG CGCAGGGCGTATTCGACGAGTCCATCGAAGTGGGGCTAATGCGGCCCATGCCGCTGGCAGACGGCCTGGTGGCGACCGAGCTGTTTCGTGAGCCCTTGGT GGCAGTGATCAACGCCTCTCATGCGCTGGCCAACGGCGCCGAACAGGGTGTGCACCTGGCAGCGTTGGCCCACGAGCCCTTCGTGTTCTTTCCGCGTAGC TACGGCAGTGGTTTGTACGCGCAGTTACTGGAGCTGGCGCGCCAGGCGGGTTTCAGTCCCCACTTTGCGCAGGAGGCAGGGGAGGCCATGACCATCATCG GCCTGGTGTCGGCGGGGCTTGGGGTGTCGGTGCTGCCGGCGTCCTATCAGCGCATGCGCATTGAGGGCGTGGTGTACCGCACCTTGCTGGACGAGCAGGC CACCTCGGCGGTCTGGCTGGTACAGCGCCAGTCCCGCAGGTCAGCGATGGCTCAGGCGTTTGCCGAGCTGCTCACCGGGCAGGTTCAGGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AACCTGACCGGTGAGCAGAGCGGATCATCAGTTGACGCGGGCCAGGTCACCCTTGAGTGCAACACCGGCAATCACTGCACCGGCGTGGCATTCGTAAGTG GAAGCGTCCTTGCGTTCGTTGCGCTTGTAGTAGCTGGCGATGTTCGTCACCGCATTGGCGTTGGCCTTGCGGGCAGCGTCCTGCAAGGTCAGCAACGCGG ACTGCAGGGCCCACTCGCAGGCAGCCTCGTCACTCTTGTTGAAGGCGTTGGTTTTCTTGTTGGTGACCGAGTTAGGGCTGATCACGGTGACCTTGCCGCG CGGCTTTACGCCGGCCAGGTAGAATTTGACCGAGCCATCGAGCTTCTTCTCGGCAAGCATCTGCTGCACCACCTTTTCGAACGGCAGGTACAACGCCGTG TCGCGGGCCTGGCTCAGGCCGGGCAGGGCAGCCAGCAGCAGGGCGGTAGCGGCGGTCAGGGTTTTCAAGCGCATCGGGTTCTTCCTTGGTCAGTGGTTGG
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Amino Acid Sequence |
>LysR family transcriptional regulator
MELRHLRYFVAVAEELHFGRAAQHLGISQPPLSQQILALEQELGARLFERTNRRVELSEAGRLFLEEARQVLAQVEKAADVARRAQLGELGEMKIGFTSS APFTSKIPKAIHAFRQRFPAVHLNLMEMSSREVAQGVFDESIEVGLMRPMPLADGLVATELFREPLVAVINASHALANGAEQGVHLAALAHEPFVFFPRS YGSGLYAQLLELARQAGFSPHFAQEAGEAMTIIGLVSAGLGVSVLPASYQRMRIEGVVYRTLLDEQATSAVWLVQRQSRRSAMAQAFAELLTGQVQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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