Strain | Pseudomonas monteilii NBRC 103158 = DSM 14164 Q381DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCGTTCCTGGTACTGGCTGCCCAGTACGAAAGCTGGAGCCTGCCACTGGCGGTGATCCTGATCGTGCCGATGACCCTGCTGTCGGCCATAACCGGTGTGA TCGTGTCGGGTGGCGACAACAACATCTTCACCCAGATCGGTTTGATCGTACTGGTGGGCCTGGCGTGCAAGAACGCGATCCTGATCGTCGAGTTCGCCAA GGATGAACAGGCCAAAGGCCTCGACCCGCTGGCTGCGGTGCTGGAAGCCTGCCGCCTGCGTCTGCGGCCGATCCTGATGACCTCGATCGCCTTCATCATG GGTGTGGTGCCACTGGTGTTCAGCTCCGGTGCAGGTTCCGAAATGCGCCATGCCATGGGTGTGGCAGTGTTCTCGGGGATGATCGGCGTGACCGTGTTCG GCCTGTTCCTGACCCCGGTGTTCTTCTTCCTGATTCGCCGTTTCGTCGAGCGTCGCCAGGCCCGCAAGGCCGAACACGTTCAAGTGCTGGAGAACCATGC
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DNA Sequence for Gene |
>Q381_RS0109030
ATGAACCTGCTCAAACCCCTGACCCCAAGCCTGCTGGCACTGGCCCTCGCGGCCTGTGCGGTAGGCCCGGACTACCAGGCCCCGGCCACCGAACCTGCGC AACTGAACAGCGACGTGCAGGCCAAGGCCTACGACCGTAGCCGCTTCGAAAGCCTGTGGTGGAAGCAGTTCGATGACCCGGTGCTGAACCAGCTGGTGCA GGCCTCGCTCGACGGCAACCGTGATTTGCGCGTGGCCTTCGCCCGTTTGAGATCGGCGCGTTCGATCCGTGAAGACGCCGAGAACGATCAGTTCCCGGTG GTCACCAGCCGCGCCAGCAGCGACATTGGCAAGGGCCAGATCCCTGGCCAGACCACGCAGCGGGTGAACAGCGAGCGCTATGACCTGGGCCTGGACATGG CCTGGGAGCTTGACCTGTTCGGCCGCATCCAGCGCCAGATCGAGGCCAGCGAAGCCCAGGAAGCGGCGGCCGCCGCCGACCTGCAGCAGTTGCAGGTGAG CCTGATCGCCGAGCTGGTCGATGCCTACGGGCAGCTACGCGGTGCCCAGTTGCGCGAGAAGATCGCCCTGGCCAACCTCAAGACCCAGCAAGAATCGCGG ACCATTACCGAAACCCTGCGCGATGCCGGTGTGGGCAACGACCTCGACGTGGTGCGTGCCGATGCACGCCTGGCCGGGGTCGAGGCCACTGTGCCGCAAC TGCAAGCTGAACAGGCTCGGGCGCGTCATCGCATTGCCACCCTGCTCGGCCAGCGCCCAGAGGCACTCAGCGTAGACCTGTCGCCCAAGGCCCTGCCGGC CATCGCCAAGGCGTTGCCGGTAGGCGATCCGGGGGAACTGCTGCGCCGCCGCCCGGATATCCGCAGCGCCGAACGCCAACTGGCGGCCGCCACCGCCAAC GTAGGCGTAGCCACGGCAGACCTGTTCCCCCGCGTCAGCCTCAGCGGCTTCCTGGGCTTTACCGCCGCGCGTGGCTCGCAGATAGGCTCCTCGGCTGCCA ATGCCTGGGCACTGGGCCCAAGCATTACCTGGGCGGCCTTCGACCTGGGCAGCGTGCGGGCCCGCCTGCGCGGCGCCAAGGCCGATGCCGAAGGGGCGCT GGCCAATTACGAGCAGCAGGTATTGCTGGCTCTGGAAGAGTCGGCCAATGCCTTCAGCGATTACGACAAGACCCAGCAGCGGCTGCTGTCGCTGATGCGC CAGAGCGATGCCAGCCGCAAGGCGGCAGAGCTGGCCTCGATCCGCTATCGCGAAGGGACGGTCGACTACCTGGTGCTGCTCGATGCCGAGCGTGAGCGGT TGAGCGCAGAAGATGCGCAGGCTCAGGGCGAAGTCGAGCTGTACCGCGGCATTGTCTCGATCTACAAGGCCCTGGGCGGCGGCTGGCAACCGGAAACCGT GGCCAGCGCACACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TACCCCCTGTTTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCTGGCCCTGGTCTGCGGGGCTTTTTTATTGTGGATAAGCATTGGC GCCGTTTTGCCGCCAAACTACAAGGGCGTGGTTGCATTTACCCCCCGTCTGGCCCAAGCTCTGCCCCTTCGCCGCCACGGATCGTCCGATGCCCAGACGC AACCGCTACCTGATCGCCTTGCTGTTGTTGATCCTGGTATCGGCCCTGTTCGGCTACCTGTGGCGCGACACCCCACCAGCCGCACCGACCTTGCCGGCGC ACAGCTACGCCAAGGCACTGCGCCAGGCCCACGACGGCCAGCCCGGTGCGGCACGGGTGCTGTACCAGCAATTGCAACGTAACGACTTGCCCGCCATCCG GCGTGCGGCACTGTACGCCGAGTTGCCCAACTACCCCTCGCCACTGGCATTGAAGCTCGCCCGCCAGGACCTGGAGCATGCCGACCCACTGGTGCGCCGA
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Amino Acid Sequence |
>RND transporter
MNLLKPLTPSLLALALAACAVGPDYQAPATEPAQLNSDVQAKAYDRSRFESLWWKQFDDPVLNQLVQASLDGNRDLRVAFARLRSARSIREDAENDQFPV VTSRASSDIGKGQIPGQTTQRVNSERYDLGLDMAWELDLFGRIQRQIEASEAQEAAAAADLQQLQVSLIAELVDAYGQLRGAQLREKIALANLKTQQESR TITETLRDAGVGNDLDVVRADARLAGVEATVPQLQAEQARARHRIATLLGQRPEALSVDLSPKALPAIAKALPVGDPGELLRRRPDIRSAERQLAAATAN VGVATADLFPRVSLSGFLGFTAARGSQIGSSAANAWALGPSITWAAFDLGSVRARLRGAKADAEGALANYEQQVLLALEESANAFSDYDKTQQRLLSLMR QSDASRKAAELASIRYREGTVDYLVLLDAERERLSAEDAQAQGEVELYRGIVSIYKALGGGWQPETVASAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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