Pseudomonas chlororaphis YL-1, P637_RS0129725
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis YL-1 scaffold3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATTGCCGGGTGTCGGTGGTCAGCGGCTCGGTGCAGCTGCAACCCTTGTTCGGGCCGCAACTGGTGTTGCGCGAAGGCCAGCGGGTCCGGCTGCGGGCGG AGGGCGCCGGCCAGATCGACGCCTTCGATGCGCAGTTGCCGGGCTGGCGTGACGGCGTGCTGATGGCGCAGAACCAGCCGCTGGGGGATTTCCTGCGCGA GCTGAGCCGTTATCGTCCGGGCCTGCTGCGCTGGGAACCGGAACTGGAAGCCCTGCGCGTCACCGGCAGCTTCCGTCTCGACAACACCGACCGCGTGCTG TCGTTGCTGGCCGCCAGCCTGCCGCTGGAGGTGCATTCGCGCACCCGCTACTGGGTGACTCTGACTTTGCCAAAAGAAGCTTCGGCAAAAGAACCCCCGC CGAAAAACGCCCCGCCAAAAAATATTGGCTGAAGCCTGTCCCTTTTTTTCGCCTCGCCGGTCATTCCAGGTAAGTGAACAAAAAACGAGAGCTTCCTCCC
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| DNA Sequence for Gene |
>P637_RS0129725
ATGCCCGCAGTATTGCCTTTCCGTTTGCGCCCGGTTTCGCCGGGCCTGCGTCCGTTGTTGCACTTGGGCTTCATGCTGACCCTCAGTTCCAGTCCGTTAT TCATCCAGGCCAGTTGGGCCGACGCCGCCGCGCGGCGCAGCTATCAGGTGCCGGCCGGCCCGCTGAGCGCCGCGCTGACCCGTTTCGCCGGCCTGGCGGG GGTCAACCTGTCGGTGGACCCGCAGCTGGTCAGCGGGCGCAACAGCAGCGGGCTGTCCGGCGAGTACGGGGTGGAAGAGGGCTTTGCCCGCTTGCTGCAG GGTTCCGGCCTGCAACTGCAACCGGTGGGCGAGCAGGCTTATATCCTCACCCCGGCGCCGCAAGGCGGCAGCCTGCAACTGGCGCCGACCTCGATTCTCG GCGCCAGCGGCGCGACCGACAGTGACGTCTTCGCCGGCGGCCAGGTGGCGCGCCGGGGTTCCCAGGGCCTGCTGGGCTCGAAGGACTTCATGGAAACGCC GTTCAGCATGACCACCTACACCAGCGAGGCGGTGAAGAACCAGCAGGCGCGGACCCTCGGCGACCTGATCGCCAGCGACCCCTCGGTGCGCGCCACCAAC CCGGCGGGCGGCCGCTACGAGCAGTTCACCATCCGCGGCTTCAGCCTGTTCAACAGCGATGTCGCCTACAACGGTCTGTACGGCGTGCTGCCGACCTACA CCATCGACATGGAAATGGCCGACCGGGTGGACATCCTCAAGGGCCCGACCCAGCTGATCAACGGCATCTCGCCGCGGGGCAGCGTCGGCGGCGGGATCAA CGTGGTGCCCAAGCGCGCCACCGACAAGCCCATCACCGAACTCACCGGCAGCTACGCCTCCGACAGCCAGGTTGGCGGCGCGGTGGACATCGGTCGGCGC TTCGGCGAGGACAACAAGTTTGGCGTGCGCCTGAACGCGGTCAAGCAATCCGGCGACACCAAGTGGGATCACCAGAGTGTCGACCGCGAGATGGCGGTGC TGGGCCTGGACTTCCGTGGCGAGCGCCTGCGCCTGTCGACGGACATCGGCCACACCGAGCGCGAAACCGACGCGCCCCAGGAGCGGGTGCAGATCGGCGC CAACGCCAAGGTGCCGGACGCCGACGATGTGCGGCACAACTATGCGCAGTCCTGGAGCAAGGCGCGGACCAAGGACACCTTCGGCACGGTCAACGCCGAA TACGACGTCAATGATTCGGTCATGCTGTACGGCGGCGTCGGCGCGCGTAAAAGCAACCACGACTTCCTGCGCCATGCGGTGTCGATCACCAACGACGCCG GCGACTTCAGCGTCCAGCCCCGCGACTTCACCCGCGACGAAAACGTGCGCACCACCACGGCGGGCGTGCGCAGCTGGTTCCATACCGGCCCGGTAAGCCA TGAGGTCAACCTGGCGGCCAGCTACTTCTACATGGATTTCGAAAACGGCGGCGCGCGCTATGCCGCGTCCCCCAGCAACCTCTACAACCCGCGGCCGACG CCGACCCCGTCGCGGCCGACGCGTTTGGACCCCAAGGTCTACACCGAGAACCGCTTCAGCGGCGTGGCGCTGTCCGACACCCTGGGCTTCTTCGATGACC GCCTGCTGCTGACCCTCGGCGCGCGCTGGCAGCGGGTCAAGGTCGACGACTGGAGCGACGGCGTCAAAGGCGACACCGCCTACGACGAGGAAAAGGTCTC GCCTTCGGGCGGCCTGCTGTTCAAGGCCACCGACCAGTTGTCGCTGTACGTCAACTACATGGAAGGCCTGAGCCAGGGCAAGATCGCGCCGTCGACCTCG ATCAACGAAGACGAAATCTTCCCGCCGTTCATCAGCCGCCAGGTCGAGGCCGGCGCCAAGTACGACGCCGGGGCATTCGCCCTGACCGCCGCGGTGTTCC GCATCAAGCAGCCGGCCTACGAGACCAACGCCACCACCCGGGTCTTCGGCCCGAACGGCAAACGCCAGAACGACGGCGTCGAGCTCAGCGTGTTCGGCGA GCCGCTCAAGGGCTTCCGCCTGCTGGGCGGGGTGATGTACATCGACAGCGAACTGAAGGACACCACCAACGGCACCTTCGACGGCAACCGCGCGCCGGCC ACGCCGAAGTACAACGTCAACCTGGGCGCCGAATGGGATGTGCCGAAGGTCCAGGGCCTGACCCTGACCGCTCGCGGCATCTACTCCAGCTCGCAGTACC TGGACCAGGCCAACAGCAAGGAAATCGATTCCTGGGAGCGCTTTGACCTGGGTGCGCGCTATGCATTCAAGCTCGACGACAAGGACATCACCTTGCGCGC CAATGTCGAGAACGTGCTGGACAAGCGTTACTGGAGTTCGGCGGGGGCCTCGGACGACAGCGAGCCGGGCTTGACCCTGGCGACGCCACGGACCCTGTTG CTTTCGGCAACCGTGGGCTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAAACGATGCGGACAAGCGCCACAGGGAAGGGCGCACCGCCGTATTGATCGGCCATGACCGGTTCCCGGTCGAGGAAGGATGTATGCCCGTTATTACATG ATGAACTTGCCGACCTCTTGAATGAGGTATTGGCCATTTAATGGCAACTAACGAAGTTGTCGGAAAGATGGCAATAACATGGCTAACTCATGGCATCGTT AATGACTTTTCCCGGGTTTATCAACTTGGTTGTTGGTGTGCGCGCGCTATTTAACTTATGCCTGGAAGTGCTATGTAAATTTCCAAATAAGTTCGAATAA GCAGTTGCACCTTTTTATTAATGATAATAATTTGCATGTCGAATTTAACGAGGGTGAACAGATGTTGAATGATGGCATATTGCGCACTAGTCCTCTGCAA AAAACCAATGCCGACTATCTGGCCCGGCAAGGCAAGTTCGAATCCAATGTGCGCAGTTATCCGCGCAAGTTGCCGCTGGCCATCGCCAAGGCGCATGGGG
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| Amino Acid Sequence |
>TonB-dependent receptor
MPAVLPFRLRPVSPGLRPLLHLGFMLTLSSSPLFIQASWADAAARRSYQVPAGPLSAALTRFAGLAGVNLSVDPQLVSGRNSSGLSGEYGVEEGFARLLQ GSGLQLQPVGEQAYILTPAPQGGSLQLAPTSILGASGATDSDVFAGGQVARRGSQGLLGSKDFMETPFSMTTYTSEAVKNQQARTLGDLIASDPSVRATN PAGGRYEQFTIRGFSLFNSDVAYNGLYGVLPTYTIDMEMADRVDILKGPTQLINGISPRGSVGGGINVVPKRATDKPITELTGSYASDSQVGGAVDIGRR FGEDNKFGVRLNAVKQSGDTKWDHQSVDREMAVLGLDFRGERLRLSTDIGHTERETDAPQERVQIGANAKVPDADDVRHNYAQSWSKARTKDTFGTVNAE YDVNDSVMLYGGVGARKSNHDFLRHAVSITNDAGDFSVQPRDFTRDENVRTTTAGVRSWFHTGPVSHEVNLAASYFYMDFENGGARYAASPSNLYNPRPT PTPSRPTRLDPKVYTENRFSGVALSDTLGFFDDRLLLTLGARWQRVKVDDWSDGVKGDTAYDEEKVSPSGGLLFKATDQLSLYVNYMEGLSQGKIAPSTS INEDEIFPPFISRQVEAGAKYDAGAFALTAAVFRIKQPAYETNATTRVFGPNGKRQNDGVELSVFGEPLKGFRLLGGVMYIDSELKDTTNGTFDGNRAPA TPKYNVNLGAEWDVPKVQGLTLTARGIYSSSQYLDQANSKEIDSWERFDLGARYAFKLDDKDITLRANVENVLDKRYWSSAGASDDSEPGLTLATPRTLL LSATVGF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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