Pseudomonas chlororaphis YL-1, P637_RS0125225
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis YL-1 contig86, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTTGTTGTGCGAAGGCGGTGAGCTGCTGGCCGAGCATTTCTCCCTGAGCAGCGAAGCGCTGCCGGAAGAACCCGGCCTGAACCTGCGCGAACGCCTGGAG AAGGTCGAGCGCCACCTGCTGCTCGATTGCCTGCGCAAGAACGACGGCAACCAGACCCTGGCGGCCCGCGAGCTGGGGCTGCCCAGGCGCACGCTGCTGT ACCGCCTCGGGCGGTTGAACATCAATCTTGGCGACTTCGAGGGTTAGCGCGACATGACTTTCCCCAGCGCCTTTTTCGTTTCGCCAAGCGTCGCCCGCCA GGGTCGGCGCTTTGTGCATTGTCTACCCATGGAGACCCTCTGATGTCTGTTCGTCACTGGCAAGCCGCCCTGCTGGCTCTGATCGTTCTCAGCGGCCTCG GCGGCTGTAGCGGCAATTACAAATTCAACGACAACACCTATCGCCCATTGGGTGATCCGCAGGCGGTCAATCGCGGCAAGTGACCGCAAGGAGCATCATC
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| DNA Sequence for Gene |
>P637_RS0125225
ATGGAACTGGTTTTCGAAATGCTGAACACCAAGCAGTTCGTGCCCACGGAGTTGAGCAGCAAAACCTTCAAGCAGGCCGGTGGGGTGATCGGGCGGGGCG AGGATTGCGACTGGATCATTCCGGACCGCAAGCGTCACCTGTCCAATCACCACGCGATCGTCAGCTACCGCGACGGAATGTTTTTCCTCACCGATACCAG CAGCAACGGTATCCAGGCCAGTGACAGCGGCGCGCGCCTGCGCAAGGGCGAGCCGCAGCGTATCGAGCACGGCAGCGTGTATGTGCTGGGGGATTTCGAG ATCCGCGCGCGCCTGGTGCGCGATCCGGCGACCTTCGACGCCGAGGTCGGGCGTCCGCAAGCCGCTGGCAGCATCATTCCCGATGACGCATTCCTCGACC TCGACCCGCTCAACGCGCTGGACCAGCAGGAGCGGGTGTATTCGGAAATCGACGAGCTGACCGCGCTCAACACGCCGCGCCAGGAACCACGGCAGCGCGC GGACTATGCGCGGATCGACATGGAAAGCCTGCTGGTGCCGGAACTGGTGGCCCAGCCCGAGGCGCCGGTCGCCGTCGAGCCGGCCCCGGTGGAGCGCCAG CGCGAAGGCTTCTGGGAGCATTTCGGCGCGGCGCTGGGGGTGGACCTCAAAGGCCTCGATCACGACGCCCGCGAAGCCCTGGCGATCGATGCCGCGCGCC TGCTCAAGCAAAGCATCGGCGGCCTGCAGCAGAGCCTGCGCACCCGCAGCGAGCTGAAAAACGAACTGCGCCTGGCCCTGACCACGGCCCAGGGCGGTAG CAAGAACCCGCTCAAGTTTGCCGTGGACGCCAGCGAAGCGTTGGGCATCCTGCTGCAGGGCAACAAGCCCGGCCAGTTGCCGGCCGAGCAGGCGATCTCC CGCGCGTTCCGCGATCTGCAGGCGCACCAGGTGGCGCTGCTGACCGCCAGCCGCGCAGCTGTACGTGGCACCCTCGAGCATTTTTCGCCGCAGCAACTGA CCCTGCGTTTCGAGCGCGACAACAAGCCGTTGCTGGCCACCTCCGGCAGCCGCTGGAGAGCCTACAACCGCTACCACCAGGCCCTGCGCCAGGACGATGA CTGGAGCGAACGCCTGCTGGCCCGCGACTTCGCCCAGGCCTACGAAGAACAGATCCGCCTGATCTCCACCCTTCACACCGAACACCAAGGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCGCATGTCTCGCTGCTCGACCCTGTTACTCAAGACGCTGGCTGCGCTGACCGCCCTGGCGTTGCTCGCCGGCTGCTCGTCGCTGTCGCCGTACTCGAC CATGACCAAGCTCAACCTCAAGCTGACCGCCAGCGACCAGCTCAACCCGGACCTCAACGGTCGTCCGTCGCCGATCGTGGTGCGGCTGATCGAACTCAAG CATCCGGTGGCCTTCGAGAACGCCGATTTCTTCAGCCTCTACGAGCGCGCCAAGGAGTCCCTGGCCCCGGACATGGTGGCCAGCGAAGAACTGGAACTGC GCCCGGGTGAAACCGTGGAACTCAAGCTCAGCGTCGAAGAAGGCAGCCGCTACGTCGGCGTGCTGGCGGCCTACCGCGACCTGTCGGAAACCCAGTGGCG CTATGTGGTGCAGCTCACTCCGGTGGAACTGACCGAAGCCGACCTGACCCTCGACCAGGCCGGTATCCGCACCAGCAATGCAACGCTCGCCAAGGCGGAC
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| Amino Acid Sequence |
>signal peptide protein
MELVFEMLNTKQFVPTELSSKTFKQAGGVIGRGEDCDWIIPDRKRHLSNHHAIVSYRDGMFFLTDTSSNGIQASDSGARLRKGEPQRIEHGSVYVLGDFE IRARLVRDPATFDAEVGRPQAAGSIIPDDAFLDLDPLNALDQQERVYSEIDELTALNTPRQEPRQRADYARIDMESLLVPELVAQPEAPVAVEPAPVERQ REGFWEHFGAALGVDLKGLDHDAREALAIDAARLLKQSIGGLQQSLRTRSELKNELRLALTTAQGGSKNPLKFAVDASEALGILLQGNKPGQLPAEQAIS RAFRDLQAHQVALLTASRAAVRGTLEHFSPQQLTLRFERDNKPLLATSGSRWRAYNRYHQALRQDDDWSERLLARDFAQAYEEQIRLISTLHTEHQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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