Pseudomonas chlororaphis YL-1, P637_RS0122760
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis YL-1 contig75, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGCGATGATTCGCCAGGGCCGCCCGGCGCCGGTGCCGGCAGCTGTCGAGGAGGCGGGGGAATACCCGCTGGACGATGCCGAACGCCTGGCCTTGCTCA ACGCCCTGGAACAACAGCGCTGGCATATGACCCACACCGCCAAGCAGCTGGGGGTGAGCCGCAACACCCTCTATAGAAAGCTGCGCAAGCATGGGATCGC TCGCTAGGCGCGGTACCGCGTTATCGTTCATCGCGGGCAAGCCTCGCTCCTACAGAAGATGCGCATTCCTCTGTAGGAGCAGCCGGTCGACGCTCGATTG CTCGCGACAGGCGGCGCAGCCGCCGATACACCGGTAACCGCGGTCCAAGCCCCCAACCGCGTTCGGGCGATTCCCCGGTAAAAGCCCCACAGAACTCGTC ATAGCCTCCGGCAGTGACAACCGTGTGTTCCCCCATCAGCTAAAGAGTGCGATTTGCAGCCCTCTACGCTAACCTGCCTCGATGTTTTACGAGGTCGACT
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| DNA Sequence for Gene |
>P637_RS0122760
ATGCACATTCATATTCTCGGTATTTGCGGCACTTTCATGGGCTCGATGGCGGTTCTGGCCAAAGAGCTGGGCCATCATGTCACCGGCTCCGATGCCAACG TCTACCCGCCGATGAGCACCCAGCTCGAAGCCCAGGGCATCGAGTTGACCCAGGGCTACGACCCGGCCCAGCTTGACCCGGCGCCGGACCTGGTGGTGAT CGGCAACGCCATGTCCCGCGGCAACCCGGCGGTGGAGTATGTGCTGAACAAGGGCCTGCCCTATGTTTCCGGCCCGCAATGGCTGGCCGACCATGTGCTG CAAGGCCGCTGGGTCCTGGCGGTCGCCGGCACCCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCATGCGGGCATGAGCCCTGGCT TCCTGATCGGCGGCGTGCCGCAGAACTTCTCGGTGTCGGCCCGCCTGGGTGGCACACCGTTCTTCGTGATCGAGGCCGATGAATACGACAGTGCCTTCTT CGACAAGCGCTCGAAGTTCGTGCACTACCGTCCGCGCACGGCGATCCTGAACAACCTCGAGTTCGATCACGCAGACATCTTCCCCGATCTGCCGGCTATC GAACGGCAGTTCCACCACCTGGTGCGGACCATCCCGAGTGAAGGCCTGGTCATCCACCCGACCACCGAACCGGCCTTGTTGCGGGTGATCGACATGGGCT GCTGGACCCCGGTGCAAACCACCGGCGCGGGCGGCCAATGGCAGGTCAAGCTGCTCAGCGAAGACGGCTCGAAGTTCGAAGTGATGTTCGAGGGCGAGGC CCAAGGCGTGGTCGAGTGGGACCTGACCGGCCAGCACAACGTCGCCAACGCCCTGGCCACCCTGGCCGCGGCGCGCCATGTCGGTGTGGTGCCGGCCATG GGCATCGCTGCGCTGAGCGCATTCAAGAGCGTCAAGCGGCGGATGGAGAAGGTCGCTGAAGTCCATGGCATCACCATCTATGACGACTTCGCCCACCACC CGACCGCCATCGCCACTACTCTGGATGGCCTGCGCAAGCGCATCGGCGATGCGCCATTGATCGCGATCATCGAGCCGCGCTCCAACTCCATGAAGCTCGG TGCTCACCGTGACGGGCTGCCGGAAAGCGTCAACCAGGCCGATCAAGTGGTCTGGTATTCGCCGGCCAACCTTGGCTGGGACCTGGGCGCCACCGCCGCG CTGTGCACCGTGCCATCGATTGTCAGCGATTCCCTGGAAGGCATCATCGAGCGGGTGAAGAGCCAGGCCAAGCCGGGCACTCACGTGGTGATCATGAGCA ATGGCGGCTTCGGTGGCCTGCACGGCAAACTGGCCGAGGCACTGCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACAACGGCCCGGAACGCATCACCCTGGCGATGACCGGCGCCTCGGGCGCCCAGTATGGCCTGCGCCTGCTGGATTGCCTGGTGCGCGAAGACCGTGAAGT GCACTTCCTGATCTCCAAGGCCGCGCAGCTGGTGATGGCGACCGAGACCGACGTGACCCTGCCGTCCAAGCCGCAGACCATGCAGGCCTTCCTCACCGAG TACACCGGTGCCGCTGCCGGGCAGATCCGCGTGTATGGCAAGGAAGACTGGATGTCGCCGGTGGCCTCGGGCTCCGGCTCGCCGGCGGCGATGGTGGTGG TGCCTTGCTCCACCGGCACCTTGTCGGCCATCGCCACAGGCGCCTGCAACAACCTGATCGAGCGCGCGGCGGACGTCACCCTGAAGGAGCGCCGCCAGTT GATCCTGGTGCCGCGCGAGGCGCCTTACTCCAGCATCCACCTGGAGAACATGCTCAAGCTGTCGAACATGGGCGTGACCATTCTGCCGGCCTCTCCGGGT
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLEAQGIELTQGYDPAQLDPAPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGGTPFFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAI ERQFHHLVRTIPSEGLVIHPTTEPALLRVIDMGCWTPVQTTGAGGQWQVKLLSEDGSKFEVMFEGEAQGVVEWDLTGQHNVANALATLAAARHVGVVPAM GIAALSAFKSVKRRMEKVAEVHGITIYDDFAHHPTAIATTLDGLRKRIGDAPLIAIIEPRSNSMKLGAHRDGLPESVNQADQVVWYSPANLGWDLGATAA LCTVPSIVSDSLEGIIERVKSQAKPGTHVVIMSNGGFGGLHGKLAEALR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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