Pseudomonas chlororaphis YL-1, P637_RS0118580

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 50 539 1.8E-112
Gene3D G3DSA:1.10.287.950 - - - 212 540 1.1E-73
SMART SM00304 HAMP_11 IPR003660 HAMP domain 212 264 6.3E-7
CDD cd06225 HAMP - - 215 259 5.69669E-5
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 279 540 1.3E-77
Coils Coil Coil - - 540 541 -
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 507 4.5E-42
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 212 541 1.3E-93
Coils Coil Coil - - 469 489 -
Pfam PF00672 HAMP domain IPR003660 HAMP domain 209 251 5.1E-7
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 236 540 1.24E-73
Coils Coil Coil - - 518 538 -
CDD cd11386 MCP_signal - - 306 505 3.87479E-51

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.