Pseudomonas chlororaphis YL-1, P637_RS0116615
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis YL-1 contig62, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCTATAACTAGCGATAGTGACCGATATATGTAGCTGAACAATCAATCCAACTAACCTGAATTAAACAGACCGTTAACGAAACAACCAGACATCCTACCTT TACCTTTCGATACATCTGCTCACCCGTCGGACCAAACCCCTTGCAACACAAGGCCTCTGCAGGTTCCCATCGATTACAAATTCCGTACAAATCAACTTTA TCGTTTCCGCTAGTCTCGAACCGTAATGGCTTAACAAGGTTAATTTCACGCCTCGATAGATCGTTCCCCGTTCATGACCCCAGGCCGGATGATCGCCGGC AAAACAAATAGCAAGCGAACTAAGTACCTTCACTCAAACTTCAAGCCAACGGTTAGTTCGAAAATAATTTCACCCCTCGCTGTAACAAAGAGCACGCCCA GGACTCAAGCGTCAAAATGGAAGTGAGTACACGGAATGAATCCGTGTCGATAAGTTGTTCCCGCACTTCCTCGTCCGTTTTTCACTGTTAAGGATGTCGA
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| DNA Sequence for Gene |
>P637_RS0116615
GTGCCCCATACGTCCTCAAGTCACCCAAGTTGCCATACCAGCCTGCGTCGCTGGTTGCTGCTCTCGCTGCTGGCCGGGTCCCTGCCGGTGGCCGCCGCCG ATATGCCACAACCAGGTCAGGAAGCCCTGCGTCTGCAGCAACAGCAACAGCGCGACCTGCAACAACTGCAACTGGAACAGCGCCAGCGCCAGTTACAGCG CGGCAGCTTCGGGCCCCCGGCGGTCACTCCCGCCGAAACCACCCAGGGTGGCCAGGATGAACAGTGCTGGGCCCTGAGCGGCACACGGATCGCCGGCGTC ACGCTGTTCAAGAAAGACCGGTTGAACCGCCAGCTCGAACCCTATATCGCGCCCTGCATGGGAGTGAACGGGATCAACCGCCTGCTGGCGCAGATCACCC GGATCTATGTCGAGGCCGGTTACATCGCCAGCCGCCCCTACCTGAGCAGTGCTCCCGCCGCCGGCCATTCGCTGGATATCGTGGTCGACGAAGGTTATGT CGAGGCCGTCGAACTGGCCGACCAGAGCCTGCCGGTTTCCCTGGCCGGGGCCTTTCCCCGCATGCTCGGCGAACCGCTGAACCTGCGCGACCTGGAACAG GGCCTGGACCAGCTCAATCGCCTGCGCTCCCTGGACCTGACCGCCGATATCGCTCCCGGCAGCCAGCCCGGCGCCTCGCGGATCATCCTGCGCTCGCGCA GCAGCGGCGCCTCGCGCTGGGCCCTCGGGCTGGGTGTGGATAACCTCGGCAGCGCCAGTACCGGACGCGACCGCAACTCCGTCAACCTGAGCCTCGACAG CCCGCTGCAACTCAACGACGCGCTCAACCTGAACTTCAGCGACACCCTCAATCACGGTCCGCGCTACAGCCGCAGCGCCAGCGTTTTCTATTCGATCCCC TACGGCTACTGGACCTACAGCCTGTTCGCCAGCCATGCCGAGTACCGGGCGCCGTTCAAGCTCAGCAGCGTGACCTTCTACAACAGCGGGCGCACTGACC TGCTCAGCCTGCGCGCCGATCGCGTGCTGTGGCGCGACCAGGGGCACCAGCTGAGCGCCAACCTGCAACTGGCCCACAAGGATGTCGACAGCTACCTGGA GAAAGTCCGCCTGGGCATCCAGAGCCCGACCCTGACCGTGGCCGAAGCCGGGCTCAACCTGTTCTGGCTCGACAGCGCGGTGTGGAACCTCGATGTCAAT TACGCCCAGGGCCTGACCTGGTTCGGCGCCGACCGCGACTCGCAACAGGTGCAGAAAAACCTGCCGCAGGCGCAGTTTCGCAAGTACCGCGCCAGCCTCA GCCAATGGCGCAATGGCCACTTCGCCAGCCAGCCCTGGCAGTGGCAGAGCCAGCTGTCGCTGCAGTACAGCCCCGACCCGCTGCCGGCCATCGAACAACT GCTGGGCACCGACGACTCCGCCGTGCGCGGCTATCGCGAGAACAGCGCCTCGGGCGCCATCGGCGGGATCTGGCGCAACACCCTGCGCCTGCCGTTGCAG AACGACCTGCCCGTCAAGCTGACCCCGCGTCTGGCCTTCGACCACGGCCGGATCAAGGCGCAAGAAGGCGCCAGCAGCGAGCGCCTGAGCAGCGCCAGCA TCGGCCTGAACCTGAGCTGGAAGAACGTGCAAGTCGATGTCGACTACCAGCACAGCCTGGAAACACCCCAGCGTTTTCACCATGAATCGCCCGCCTGGCT GACCCGCCTGAGCGTGCAGATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTCCCGCGAACCGTGCATCAGCCTGAAAAAAACAGCCGAGCCTGAACACTACAGCAGCGTTGCAACGAACAGCGCGCACCGCCACTCGGCCCACACATA GAGAGCTTCTTATGCCCGACAACACATCTGTGTTTCACCTGTCCCCCAGGGGCAAACTGCGCCTGGCCATCGCCAGCCTGCTCCTGGTCTCCCATCTGCC GCAGGCGCTGGCCGGCGGTATCACCGTGGCCCCGGGCCCGGGCGGTATCCCGCAGCTGCAAAACCAGAACGGCGTGCCGATCGTCAACATCGTCGCGCCC AACGGCGCCGGGCTCTCCCATAACCAGTTCCTCGACTACAACGTCGATCGCCAGGGCGTGGTGCTGAACAACTCCCTGCAATCCGGCGCCTCGCAACTGG CCGGGCAGCTGGCTGCCAACCCGCAGTTCCACGGCCAGGACGCCAGTGTGATTCTCAACGAGGTGATCAGCCGCAACGCCTCGGCGCTCAACGGTACCCA
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| Amino Acid Sequence |
>ShlB family hemolysin secretion/activation protein
MPHTSSSHPSCHTSLRRWLLLSLLAGSLPVAAADMPQPGQEALRLQQQQQRDLQQLQLEQRQRQLQRGSFGPPAVTPAETTQGGQDEQCWALSGTRIAGV TLFKKDRLNRQLEPYIAPCMGVNGINRLLAQITRIYVEAGYIASRPYLSSAPAAGHSLDIVVDEGYVEAVELADQSLPVSLAGAFPRMLGEPLNLRDLEQ GLDQLNRLRSLDLTADIAPGSQPGASRIILRSRSSGASRWALGLGVDNLGSASTGRDRNSVNLSLDSPLQLNDALNLNFSDTLNHGPRYSRSASVFYSIP YGYWTYSLFASHAEYRAPFKLSSVTFYNSGRTDLLSLRADRVLWRDQGHQLSANLQLAHKDVDSYLEKVRLGIQSPTLTVAEAGLNLFWLDSAVWNLDVN YAQGLTWFGADRDSQQVQKNLPQAQFRKYRASLSQWRNGHFASQPWQWQSQLSLQYSPDPLPAIEQLLGTDDSAVRGYRENSASGAIGGIWRNTLRLPLQ NDLPVKLTPRLAFDHGRIKAQEGASSERLSSASIGLNLSWKNVQVDVDYQHSLETPQRFHHESPAWLTRLSVQI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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