Pseudomonas chlororaphis YL-1, P637_RS0109205
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis YL-1 contig38, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCGGGCAGCGGTTCCTGGAGATCTGGTCGGGGCTGCCGGTGCTGTACCTGCTGATCATCCTCGCCAGCTTCGTGCAGCCGAACTTCTGGTGGCTGTTG GGGATCATGCTGCTGTTCTCCTGGATGAGCCTGGTGGACGTGGTGCGCGCCGAGTTCCTGCGCGGGCGCAACCTGGAATACGTGCGCGCCGCCCGCGCCC TGGGCATGCAGAACGGCGCGATCATGTTCCGCCATATCCTGCCCAACGCCATGGTCTCGACCATGACCTTCATGCCGTTCATCCTCACCGGCGCCATCGG CACCCTGACCGCCCTCGACTTCCTCGGTTTCGGCCTGCCACCCGGCGCGCCGTCCCTGGGCGAACTGGTGGCCCAGGGCAAATCCAACCTGCAGGCGCCG TGGCTGGGCATCAGTGCCTTTGCCGTGCTGGCGATCATGTTGAGCCTGCTGGTATTCATCGGCGAGTCCGCTCGCGATGCCTTCGACCCGAGGAAATGAG
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| DNA Sequence for Gene |
>P637_RS0109205
ATGAATCAGGACAATCTGATCGAAGTCCGCGACCTCGCCGTCGAATTTGTCGTCGGCGAGCACAAGCAACGGGTGGTCGAGGGCATCAGCTTCGACATCA AGCGCGGCGAAACCCTGGCCCTGGTGGGCGAAAGCGGCTCCGGCAAATCGGTGACCGCGCACTCGATCCTGCGCCTGCTGCCCTACCCGCTGGCCCGCCA TCCATCCGGCACTATCCACTACGCCGGCCAGGATCTGCTGACCCAGAAAGAGAAGACCATCCGCCATATCCGCGGTAACCGCATCGCGATGATCTTCCAG GAGCCCATGACCTCGCTCAACCCGCTGCACAGCATCGAGAAGCAGATCAACGAGGTGCTGGGCCTGCACAAGGGCCTGACCGGCAAGGTCGCGACCCAGC GCACCCTGGAGCTGCTGGATCTGGTGGGCATCCCCGAGCCGCACAAGCGTCTCAAGGCCCTGCCCCACGAGCTGTCCGGCGGCCAGCGGCAACGGGTGAT GATCGCCATGGCCCTGGCCAACGAGCCGGAGCTGCTGATCGCCGACGAGCCGACCACCGCCCTCGACGTCACCGTGCAGTTGAAGATCCTCGAACTGCTC AAGGAGTTGCAGGCGCGCCTGGGGATGGCCTTGCTGCTGATCAGCCACGACCTCAACCTGGTCCGGCGCATCGCCCACCGCGTCTGCGTGATGCAGCGCG GCTGCATTGTCGAGCAGGCGCCCTGCGAAGAGCTGTTCCGTGCGCCGCAGCATCCCTATACCCGCGAACTGCTGGCGGCCGAGCCCAGCGGCAAGCCGGC GACCAATGTGGTCGGCCCGCCGCTGTTGCAGGTCGAGGACCTGAAGGTCTGGTTCCCGATCAAGAAAGGCCTGCTGCGCCACACCGTCGACCATGTGAAG GCGGTGGACGGCATCAACTTCAGCCTGCCCCAGGGCCAGACCCTGGGCATCGTCGGTGAAAGCGGCTCGGGCAAGTCCACCCTGGGCCTGGCGATCCTGC GGCTGATCGCCAGCAAGGGCGCCATCCGCTTCGAAGGCAAGCAGCTGGACGGCCTGTCGCAGCAGCAGGTGCGGCCGTTGCGCCGGGAGATGCAGGTGGT GTTCCAGGACCCTTTCGGCAGCCTCAGCCCGCGCATGTGCGTGAGCCAGATCGTCGGCGAAGGCCTGCGCATCCACAAGATCGGCACCGCCGCCGAGCAG GAACAGGCAATCATCGAGGCGCTCAAGGAAGTCGGCCTGGACCCGGAAACCCGGCATCGCTACCCGCACGAGTTCTCCGGTGGCCAGCGCCAGCGCATCG CCATCGCCCGCGCCCTGGTACTCAAGCCGGCGCTGATCCTGCTGGACGAGCCGACCTCGGCCCTCGACCGCACCGTACAGCGCCAGGTGGTGGAACTGCT GCGCAAGCTGCAGGCCAAGTACAACCTGACCTACCTGTTCATCAGCCACGACCTGGCGGTGGTCAAGGCGCTGAGCCATCAGTTGATGGTGGTCAAGCAT GGCCAGGTGGTGGAACAGGGCGACGCGCAAGATATCTTCGCCGCGCCGCAGCATCCCTACACCCGGCAGTTGCTCGAGGCCGCGTTCCTGGTGCCGGCCG CCGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAACCGGCCAATAAAAAACCGCCTGAGGGCGGTTTTTTATTGGCTGGACTTTCTCCCCGTCCAGCCCACGCAGCGGGCTGGATCAGCGGCTAGTCCTTTA TCTGCGGCCCGAGGCCCGGCCTGCTCATGGTCTTGTCGGCGTCCGCCAGCAAGGTTTCCACATCGGCCGGCTGGGCCGGATCGAACTCGATCTGGCCGAT GCTGAAACAGATGTCGTAGATGCACTGCTGGGTGGCGGTGCGCTCGTCGAGGATGGCCTGCAGGCGGGCGATGATCGCCAGTTTTTCCACCCGTTCCGAG CCGGTCAGCAGTACCGCGAAACGCTGGTACTCCAGATGCCCGACCACGTCGCTTTCGCGAAAGGCGATACGCAGGCCGTCGGCGAAGGTCTTGAGCGCCG CCTCGCCTTCTTCCGCCCCGTAAGCGCGGGCGATGCGGTAGATATCGTCGAGGTCGAACAGCAGCAAGGTCGCCGGGCAGTTGAGGTCCTTGCAGGCCTG
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| Amino Acid Sequence |
>microcin ABC transporter ATP-binding protein
MNQDNLIEVRDLAVEFVVGEHKQRVVEGISFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLARHPSGTIHYAGQDLLTQKEKTIRHIRGNRIAMIFQ EPMTSLNPLHSIEKQINEVLGLHKGLTGKVATQRTLELLDLVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELL KELQARLGMALLLISHDLNLVRRIAHRVCVMQRGCIVEQAPCEELFRAPQHPYTRELLAAEPSGKPATNVVGPPLLQVEDLKVWFPIKKGLLRHTVDHVK AVDGINFSLPQGQTLGIVGESGSGKSTLGLAILRLIASKGAIRFEGKQLDGLSQQQVRPLRREMQVVFQDPFGSLSPRMCVSQIVGEGLRIHKIGTAAEQ EQAIIEALKEVGLDPETRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRKLQAKYNLTYLFISHDLAVVKALSHQLMVVKH GQVVEQGDAQDIFAAPQHPYTRQLLEAAFLVPAAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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