Pseudomonas chlororaphis YL-1, P637_RS0108650
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis YL-1 contig37, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCTGGCCAACAGCTGAAAGCCGGCCATCATCCCTGAATAGGCCCCACGCAACAGCCCGACCTGGGCAAAGCTCAGGCCGAACTGGCTTTGCCAGATGG GCAGCAAGACATAGATCAGGTCGGTCAGGCCATCATGGATGGCATGGGCCCCACAGCCGGCAAACAACGACCGACGACGGATCGAGGCTGCTTCGGCTGG CGGCTCGGTGAGAGCAAGTTCGTCCTTGAAGGTATTCATGGTGTCAGGCGCGCTGAGTGGATAGGCGCTGGCATTTAAGCAGGAACCCGGTGCGGCAGCA TAGATGGGCTGGAGCGGCACCCACCGCCCGGGCATTCACTGGCTGGCCAGAATCGCCTGACCACCAGCCCGCAAGAATAAAGACTCGCCCTTCAAACCTT TCAGATTCCTCCCACAGTAATGCCCCGTCCGACTCAATAGGGTTGATGCCATCCCGCCTCCGGCTGGAAAACCGCACTGGATGGACAGGCAGAACGCTCG
|
|
| DNA Sequence for Gene |
>P637_RS0108650
ATGGCCCGCAACAGACTCCCCCCGATCAAGAGTCCCCCTTCCGGCGACGGGCACCACGTCACCTACCGAGACATGGCCCCCGGCGAACTGGCGGAACAAG ACGCCAGGCAACACGCCTATGAGCGGATGCTGGCCCGCCAACAAGCCTATGCCGACAGCCTCGCCTGCCCACCCCGCAAGCAACAGGCGATGGCCGGCTG CACCTTTACCAAATCCTGCAAGCTGCCCGACGGGGTCATGGACTACCTCAGCCCATCCGGAGTGATCCCCACCGACGCCATCAAGGACTATGGCGAGCTT GTCGTGCTGGGTGGTCGTGGAGCCGACGCGACGGGGAATATCCCGCTCAAGAAAATCAGCGGCGGCGCCCTTCCCGCCGCGCTGGGCAGCCTTGCACTGG GTGGCGAGGGATTGGCAGCCACCGGGGCTGGCGCGGCAACCGGCGGAGTTGTCGCGGGTGCCCTGGCTGGCGTGGTGGCCATGCTCTGGCCGTCGAGCCT GGGCGATAGCGCCTTGTACACGCCCGAGCAACTCGACGCCCTGAAAGAAGGTCGCACCCGCGTGCGCCTGCATATCGAACAACGGCCCGACGGCACGCTC AAGGGCTACGGCTACAACACGCAAAAGCAGCGTGGCTGGGAAATGGTCCCGGTGGTGCGCTTTGTCGCCAAAGGCCAGCAACAGGTGGCCGACTTCGGCG ACGGCGTCACCCTGATCTGGACCCCAGCGGTGGACCCATCCAGCACCTCCGGCATCCCCCCACTGGAGGCCGCGCCCCAGGCGCCGCACATCTGGATCTT TCCGCCCACCGAACAGGCGGACACCATCATCGTCGACCCGATCTACCCGCCGGAATACAAGGACTTCATTCTGGTGTTCCCGCCGGGGTCAGGGGTTCTG CCGCTCTATATCGTACTGAGCGTGCGCAAGACGCCCGGTACGGTTACGGGTCAGGGGCAGGATATAGGTGGAACCTGGCTTGCTGGAGCGGGCTCAGGGT TGGGCTCTCCGATACCCACGAAGATTGCTGATCAGTTGCGCGGGAGGGAGTTCAGAAGCTTTGATGCTTTTCGGGAGGCGTTTTGGAAAGCTGTAGGTAA TGATTCAGACTTAAGAAGTCAGTTCAGAACAGTCAACCAAAAGCTGCTAGATAAAGGGTTTTCCCCATACACACCAGAAAGTGGTCGAGTGGGATCGCGA GAAAAATACGAGCTACACCATCATGTCGGAATTGCCCAAGGGGGCGCTATTTACGATGTTGACAACCTGAGCGTAGCGACACCTAGAAGGCACATTGATA TTCATAGAGGAACAAATTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCATGCTAAAAAACAGCATTTCTGATTACACAGAACAAGAGTTCCTTCAACTTTTGACAGATATCTGTGAGGTCAACTGCCAGAACGAGGAAGATCATTC CGTTTTAGTTCGGCATTTTCGGAAAATTTCAGAGCATCCCAAAGGCTCAGATCTGATTTTTTATCCTGCTGACGATGCTGATGACTCACCAGAGGGAATC TTGAAAACAGTCAAAGAGTGGCGTAGAGCAAACGGCCTGCCAGGGTTCAAGGCCCCATAAAGCGATGACCACTAGGAAATCAATTGCCGATTACACCGAG ACCGAATTCGGTAGCTTCATCCATAAAATACTTGCCATCAACGAAGCAGGTTCCGACAAAGACCTTGGCGAACTGCTAATGCAATTCAGACAGCTTAGCG AGCACCCAGACGGTACTGACCTTATCTTCTATCCAGAAGATGGGGCCGATGACTCCCCCGAAGGCATAACCAAGACCGTTAAAGAGTGGCGCAAGGCAAA
|
|
| Amino Acid Sequence |
>pyocin
MARNRLPPIKSPPSGDGHHVTYRDMAPGELAEQDARQHAYERMLARQQAYADSLACPPRKQQAMAGCTFTKSCKLPDGVMDYLSPSGVIPTDAIKDYGEL VVLGGRGADATGNIPLKKISGGALPAALGSLALGGEGLAATGAGAATGGVVAGALAGVVAMLWPSSLGDSALYTPEQLDALKEGRTRVRLHIEQRPDGTL KGYGYNTQKQRGWEMVPVVRFVAKGQQQVADFGDGVTLIWTPAVDPSSTSGIPPLEAAPQAPHIWIFPPTEQADTIIVDPIYPPEYKDFILVFPPGSGVL PLYIVLSVRKTPGTVTGQGQDIGGTWLAGAGSGLGSPIPTKIADQLRGREFRSFDAFREAFWKAVGNDSDLRSQFRTVNQKLLDKGFSPYTPESGRVGSR EKYELHHHVGIAQGGAIYDVDNLSVATPRRHIDIHRGTN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|