Pseudomonas chlororaphis YL-1, P637_RS0104555
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis YL-1 contig16, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCGATCGCGAGTCGGTGTTCTGGATCAACTTCCTCGAAGTGCCGCCGGTGACGACCACCGACAGCAATGTGCTGCGCCTGGCCTATCGCATGCGCATG AAGCTGCTGTACCGCCCTGCGGGCCTTGCCGGCAAGGCGAACGAGGCAATCGGGCAGGTGCTCTGGAGCCTCGACAAGACCCCGGGGCCGGACGGGCAGA TGGCGCTGCTGGCCACCAGTCGGGCGCCTTACTACGTGTCCATCTCGCAGTTGGAGCTGGGCAGCGGGACTCAATCGATCAGTTGGCAGGGGATCACGCT CGAGCCTTTCGGCACGACCCGTATCGCCCTGCCCGCAGCAAAAAAGGCAGCCGTCGCCAGTGCGACGGTCGTTCGTTACCAGGTGGCGGTAGACAGCGGG GAGACGCTGAGTGGAAGTGCGCGGTTACAACAGTAGTTTTGCGATGGGCAGATTCGTGACGAGTACGTCGCCATGCGGCAGTGGCCGAGCGCCTGTGGGC
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| DNA Sequence for Gene |
>P637_RS0104555
ATGAGTCCGGGGTGGCGCGGGTCGTGTTTGGTCCTGGCGGCGCTGCTGCCACTGGCAGTACCCGATATCGCCCTGGCTTTGCAGGTGCCCAACGCCGGCC AGGCGATGCGTGACATCGAGTCGGTCCAGCCGGCGCAGCCTGCTCCTTCGGAGCTGGAGTTGGACCTGCCCAAGGCCGAGACACCCGCCGCGCCGGCAGC CCCGGACACCTCCGGAATCCGGCTGCAGGTCAAGACGTTTGCCATCGAGGGCAACCAGGTTTTCACCACCGAGCGCTTGCAGGCACTGCTGGCCGACCTG CACGACAAGGAGTTGGACCTGGCCGGTTTGCGTGGAGCTGCACAGCGGATTACCGACTATTACCAGAAGCAGGGTTATGTATTGGCCCGCGCTTTCCTGC CACCCCAGGACATTGAAAACGGCCTGGTGCGGATCGCTGTGGTCGAGGGGCGTTACGGGCGCATCGAAGTGCAGAACCGTTCGCGCGCCCTGGATCAAGT GGTGCGGGCGCCGCTGTCGTCGCTGAACAGCGGCGAGGCGGTATACGACGCGGACCTGGAACGCAGTCTCTTGCTGTTGAGCGACCTGCCCGGGGTCCAG GCCCGAGGTACCCTGCGTCCTGGCCAGGAATACGGGACCACCGACCTGGTGGTCGATACCGAATCCGGGCCACTGTTGAACGGCACCCTGGAGGCGGACA ACTTCGGCGGTTATTACACCGGCGAATACCGCCTGGGGGGCAGCCTCAACCTCAACAACCCCTTGCGTCTTGGCGACCAGCTGAGCCTGCGCGCGATGCG CAGCGACGAGTCGCAGCGTTATTTCCGCGCGGCCTACCAGTTGCCGGTCGGCCCCTGGTCGACCCGCATCGGCGGGGCGTACTCGGAAATGAGCTACCGC CTGGGCAGGAACTTCGAGGTACTGGATTACCACGGTGTCGCCAGCTTCCGCAGTTTCTTCGTCGCCCAGCCGCTGGTGCGCAGCCGCACCTTCGACCTCA CTGCGCAACTGCAATACGAAGACAAGCGGTTGCGTGACGATATCGACCTGTTCGAATTCAGCAGTCGCAAACAGATCGACCTGTGGACCCTGAGCCTCAG TGGCAACAGCCAGGACCGTTTTTTCGGGGGCGGCCAGAACTTCTTCGATCTGTCCTACGGCAGCGGGCGGTTGCGTTTCGGCGACCGTGAGGAAGAAGTC CAGGATGGCCGCACCGCGGGTACCTCGGGCGAGTTCGCCAAGCTCAATCTCAATGCGGCGCGCCTGCAGCGCCTGAGCGATCGCTTCCAGCTCTACACCC GGCTGAGTGCGCAATGGGCCAACGACAACCTGGACAGCTCGGAAAAGCTCGGCCTTGGCGGCCCCTACGGTGTGCGCGGCTATCCGGTGGGCGCCGGCAG CGGCGACCAGGGTTGGCAGGCCAGCGCCGAACTGCGCTATGCCCTGGCGCCGCGCTGGCAGCTCAGTGCCTTCGCCGACAGCGGCACGGTCAAGGTCAAC CGCCAGCCCTGGACCTCCGAGAACAACACCCGCCGGATCACCGCGACCGGTATCGGCGCCAACTGGGTGGGGCCTTCGCAGCAAGTCAACCTGACACTCG CCTGGCCGTTGCATGACAACGGCAAGACTCGGGATAAGCCGGAGCGCCGCCCCCAGGTCTGGATGAACGCGACGCAATATTTCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACCTGCTCGTAGCAGGAGTGGTGTCGCCCTGCAAATGGTTTGCAGAGCGTTTTTTAAAGAAGAGGAAGCATCGTGAACAAGATGTATGCACTGGTTTGG AACCAGGCCCTGGCGTGCTGGAATGTGGCTCATGAAGGGGCACGTCGCCGGCGCAAGTCGGGTGCGCGCAAGGGCATGGTCGTGGCGGCTGTCAGCCTGC TGGGAGTGGGCGCCATGTCGTCGGCATTCGCCCTGCCGACGGGAAATACCCATGTCTCCGGGGAAGCCAATATCCTGACCTTCAACGATGGCAAGGAAAT GTCGATCAACCAGAAAAGTGACAAGCTGATCACCAACTGGAACGACTTCAGCGTCAAAAAGGGCGAGAAGGTCTCCTTCCACCAGCCCACTAAAAACTCG GTTGCACTGAACCGCGTCGTCGGTACCAATGCCAGTGATATCCAGGGCCAGATCAATGCCAATGGCCAGGTGTTTCTGGTCAACCCCAACGGCGTAGTGT
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| Amino Acid Sequence |
>membrane protein
MSPGWRGSCLVLAALLPLAVPDIALALQVPNAGQAMRDIESVQPAQPAPSELELDLPKAETPAAPAAPDTSGIRLQVKTFAIEGNQVFTTERLQALLADL HDKELDLAGLRGAAQRITDYYQKQGYVLARAFLPPQDIENGLVRIAVVEGRYGRIEVQNRSRALDQVVRAPLSSLNSGEAVYDADLERSLLLLSDLPGVQ ARGTLRPGQEYGTTDLVVDTESGPLLNGTLEADNFGGYYTGEYRLGGSLNLNNPLRLGDQLSLRAMRSDESQRYFRAAYQLPVGPWSTRIGGAYSEMSYR LGRNFEVLDYHGVASFRSFFVAQPLVRSRTFDLTAQLQYEDKRLRDDIDLFEFSSRKQIDLWTLSLSGNSQDRFFGGGQNFFDLSYGSGRLRFGDREEEV QDGRTAGTSGEFAKLNLNAARLQRLSDRFQLYTRLSAQWANDNLDSSEKLGLGGPYGVRGYPVGAGSGDQGWQASAELRYALAPRWQLSAFADSGTVKVN RQPWTSENNTRRITATGIGANWVGPSQQVNLTLAWPLHDNGKTRDKPERRPQVWMNATQYF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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