Pseudomonas chlororaphis YL-1, P637_RS0104220 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis YL-1 contig15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCGTGGTTGACCGGAACCCCGTAATGCCCCGCGAATACCTCCTTCAAGGTATAAAGCGGGCTGGTCCCGATGTCGCCATAAACCACCCCGACCGCCGC CACCAGCATCCCCAGGGGCCTGGCCCTGGAATGCTCGCTGCCTACCGCCTGACTACTTGCCTGACCCATCCACCACTCCTACTACCCAGATCGGGGCTTC TTATAAAAGGCATGACATTCAAGACAACGCTAAGCTTGCAAGACTCTCGTGAATGCCCATGCAGCATGCACCCTTTTACTTACAGTTACAGACGTTCTGT TGACTATAAGAATTCACCCGGGCGCAACGGCGCGAAGCATAACGCAGCACTCGTCGTATTTCCCTGCATAAAGCTGGTCAAGTGCGCCAGCCGTCGCTAG AATTGCGCACTTTTTGATCAGAGGCGCCCCTAGCGCCCGTTCGTCGCCAGCGGTTTTATCCAGATCGCCGAGCGACCCGACACCTATACCGAGGTTAGAC
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| DNA Sequence for Gene |
>P637_RS0104220
|rimO
ATGTCCACCCCTACCGCGCCAGCCAACCCCAAGGTCGGCTTCGTTTCCCTGGGTTGCCCGAAAGCGCTGGTCGATTCCGAGCGCATCCTCACGCAACTGC GTATGGAAGGTTATGACGTGGTGTCCACCTACCAGGACGCCGACGTCGTGGTGGTCAACACCTGCGGTTTCATCGACTCGGCCAAGGCCGAATCCCTGGA AGTGATCGGCGAAGCCATCAAGGAAAACGGCAAGGTCATCGTCACCGGCTGCATGGGCGTGGAAGAAGGCAATATCCGCGACGTGCACCCGAGCGTGCTG GCCGTGACCGGTCCGCAGCAGTACGAGCAAGTGGTCAGCGCGGTGCACGAAGTGGTGCCGCCGAAACAGGACCACAACCCGCTGATCGACCTGGTACCGC CACAAGGCATCAAGCTGACCCCGCGTCACTATGCGTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGG CAAGCTGGTCAGCCGCCCGGTCGGCGATGTGCTGGACGAGGCCCAGCGCCTGGTCAAATCCGGAGTCAAGGAACTGCTGGTGATTTCCCAGGACACCAGC GCCTACGGCGTCGACGTCAAGTACCGCACCGGTTTCTGGAACGGCGCGCCGGTGAAAACCCGCATGACCGAGCTGTGCGAAGCCCTCAGCACCCTGGGCG TCTGGGTCCGTCTGCACTACGTCTACCCGTACCCGCACGTCGACGAGCTGATCCCGCTGATGGCCGCCGGCAAGATCCTGCCGTACCTGGACATCCCGTT CCAGCACGCCAGCCCGAAAGTACTCAAGGCCATGAAACGTCCGGCCTTCGAAGACAAGACCCTGGCCCGGATCAAGAACTGGCGCCAGATCTGCCCCGAG CTGATCATCCGCTCGACCTTCATCGTCGGCTTCCCCGGCGAAACCGAAGAAGACTTCCAGTACCTGCTCGACTGGCTGACCGAAGCCCAGCTCGACCGCG TCGGCTGCTTCCAGTACTCGCCGGTGGAAGGTGCGCCGGCCAACGACCTGGACCTGGAAGTGGTCCCGGACGAGGTCAAGCAGGACCGTTGGGAGCGCTT CATGGCGCACCAGCAGGAAATCAGCTCGGCGCGCCTGCAACAGCGCATCGGCAAGGAAATCGAAGTGCTGATCGATGAAGTCGACGAACAGGGCGCCGTG GGCCGCTGCTTCTTCGACGCCCCGGAAATCGACGGCAACGTGTTCATCGACGGTGCCGGCGACCTCAAGCCAGGCGACAAGGTCTGGTGCCGGGTGACCG ACGCCGACGAATACGACCTCTGGGCCGAAGTCCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCGTAAAAAACCGCACAGCCCCGCTCTCTTCGCGAGATGCGGGGCTTTTTTACGTCTATCGTTTGCTCAGGACCACGGATGCGTCACCACACAGGAGCA GGCGGCATGCGCCATCATTCGGTCATCCATACCCCGAAACACAGCGACTACCCGGAACTGACCCGGGTCTGGGAAGCCTCGGTGCGCGCCACCCACGACT TCCTGCCGGACAGCTACATCGAACTGCTGAGAAACCTGGTGCTGAACCGCTATCTGGATGCGGTGATGCTGATCTGCACCCGGGACCAGCGCCAGCACAT CACCGGCTTCGCCGGGGTCGCCGCCGGCAAGATCGAAATGCTCTTCATCGATCCCGACCATCGCGGCCAGGGCCTGGGCAAGCAATTGCTCAGGTACGCC ATCGAACACCTGAACGCCGACGAGCTGGACGTCAACGAGCAGAACCCGCAAGCCCTGGGCTTCTACTTCAAGCAGGGCTTCGAGATCATCGGCCGCTCCG
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTPTAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRDVHPSVL AVTGPQQYEQVVSAVHEVVPPKQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTS AYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWRQICPE LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLDLEVVPDEVKQDRWERFMAHQQEISSARLQQRIGKEIEVLIDEVDEQGAV GRCFFDAPEIDGNVFIDGAGDLKPGDKVWCRVTDADEYDLWAEVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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