Pseudomonas chlororaphis YL-1, P637_RS0103800
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis YL-1 contig15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGCGACAATGCCGCCAAGGTCAAGCTGACCCTGGAAGACGGCAGCCAGTACAAGCTCGACGGCAAGCTGGAGTTCTCCGAAGTGTCGGTCGACGAAAC CACCGGCTCCGTGACCCTGCGCGCGGTATTCCCGAACCCTGAACACACCCTGCTGCCAGGCATGTTCGTGCACGCGCAACTGCAGGCCGGCGTGAATGCC GCGGCGATTCTCGCCCCGCAACAAGGCGTGACCCGCGACCTCAAGGGCACACCGACCGCCCTGGTGGTTGGTCCGGACAACAAGGTTGAACTGCGTCAGC TCAAGGCCAGCCGCACCGTCGGCAACCAGTGGCTGATCGAGGACGGCCTGAAGGCCGGTGATCGCCTGATCACCGAAGGGCTGCAATTCGTCCGACCTGG CGTCGAAGTCAAAGCCAGCGAAGCGACCAACGTTCCAGCAAAAAACCCGGCCACTGCACAGGCAACTGACAAAGCTGCAGGCGGCAAAGGGGAGTAAACC
|
|
| DNA Sequence for Gene |
>P637_RS0103800
ATGTCGAAATTTTTTATCGACCGTCCGATTTTCGCCTGGGTAATCGCCCTGGTGATCATGCTGGTCGGGGCTCTATCGATCCTCAAATTGCCGATCAACC AATACCCGAGCATCGCGCCTCCAGCGATCGCCATCTCCGTGACCTACCCAGGCGCTTCCGCACAGACCGTGCAGGACACCGTGGTGCAGGTCATCGAGCA GCAGCTCAACGGTATCGACAACCTGCGCTATGTGTCCTCGGAAAGTAACTCCGACGGCAGCATGACCATTACCGCGACCTTCGAGCAGGGCACCAACTCG GACACCGCGCAGGTTCAGGTGCAGAACAAGCTGAACCTGGCCACCCCGCTGCTGCCGCAAGAAGTGCAGCAACAGGGTATCCGCGTGACCAAGGCGGTGA AGAACTTCCTGTTGGTGATCGGTGTGGTTTCCGAGGACGGCAGCATGTCCAAGGACGACCTCTCGAACTACATCGTGTCCAACATGCAGGACCCGATCTC GCGGACCGCGGGCGTGGGTGACTTCCAGGTGTTCGGTGCCCAGTACGCCATGCGTATCTGGCTCGACCCGGCCAAGCTGAACAACTTCAACCTGACTCCG GTTGACGTGAAGAACGCCGTGGCGGCGCAGAACGTCCAGGTCTCGTCCGGTCAGATCGGCGGTTTGCCAGCCCTGCCAGGCCAGCAACTGAACGCCACCA TCATCGGCAAGACCCGCCTGCAGACTGCCGAGCAGTTCAAGGCGATCCTGCTGAAGGTCAACGCGGACGGCTCGCAAGTGCGTCTGGGCGATGTCGCCGA TGTCGCCCTGGGGGGTGAAAACTACTCCGTCAGTGCCCAGTTCAACGGTGCCCCGGCTTCCGGCCTGGCCGTGAAACTGGCCAACGGCGCCAACGCCCTG GACACCGCCAAGGCCCTGCGCAAGACCATCAGCGACCTGGAACCGTTCTTCCCGCAAGGGATGAAAGTGGTATTCCCGTACGACACCACCCCGGTGGTGA CCGAGTCGATCAAGGGTGTGGTTGAAACCCTGGTCGAAGCGATCGTGCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAACTTCCGCGCCACCGTCAT CACCACCATGACCGTTCCGGTGGTGTTGCTGGGTACCTTCGGCATCCTCGCGGCCGCCGGGTTCAGCATCAACACCCTGACCATGTTCGGCATGGTGCTG GCCATCGGCTTGCTGGTGGACGACGCCATCGTCGTGGTGGAAAACGTCGAGCGGGTAATGGCCGAGGAAGGCCTGTCACCCAAGGAAGCGACCAAGAAGT CCATGGGCCAGATCCAGGGCGCCCTGGTCGGTATTGCCCTGGTGCTGTCGGCGGTACTGCTGCCGATGGCGTTCTTCAGCGGTTCCACCGGTGTGATCTA CAAGCAGTTCTCGATCACCGTGGTCTCGGCCATGGCGCTGTCGGTACTGGTTGCCCTGATCTTCACCCCGGCCCTGTGCGCCACCATGCTCAAGGCCATT CCCCACGGCGAACACGCCGCGCCGAAACGCGGCTTCTTCGGCTGGTTCAACCGTACCTTCGACCGCAGCGTCAAAAGCTACGAGCGTGGCGTGGGCAACA TCCTGCGGCACAAGGCGCCTTACCTGCTGGCCTACGCGCTGATCGTGGTCGGCATGATCTGGCTGTTCGCCCGTATCCCGACTGCGTTCCTTCCGGAAGA AGACCAGGGCGTACTGTTCGCCCAGGTACAGACCCCGGCCGGCTCCAGTTCCGAGCGGACCCAGGTGGTCGTCGATGAAATGCGCGCCTACCTGCTGGAC AAGGAAAAGGACACCGTGGCCTCGGTCTTCACCGTGAACGGCTTCAACTTCGCCGGTCGCGGCCAGAGCTCGGGCATGGCGTTCATCATGCTCAAGCCGT GGGACGAACGCTCCGTGGACAACAGCGTGTTCAACCTGGCCGCCCGTGCCCAGCAGCACTTCTTCAGCTTCCGTGACGCGATGGTGTTCGCCTTCGCTCC GCCGGCGGTACTGGAGCTGGGTAACGCCACCGGTTTCGACGTGTTCCTGCAGGACCGCGCCGGTATCGGCCACGAGAAACTGATGGAAGCGCGCAACCAG TTCCTCGGCATGGCGGCGCAGAGCAAGATCCTCTCCCAGGTGCGTCCGAACGGCCTGAACGACGAGCCGCAGTACCAGCTGGAAATCGATGACGAGAAGG CCAGCGCCCTGGGCGTGACCATCTCCGACATCAACAACACCTTGTCGATTGCCCTGGGCAGTAGCTACGTCAACGACTTCATCGACCGCGGTCGGGTGAA GAAGGTGTACATCCAGGGTCAGCCTAACGCTCGCATGAGCCCCGAGGACCTGAAGAAGTGGTACGTGCGCAACAGCGCCGGGACCATGGTGCCGTTCGCC TCCTTCGCCAAGGGCACGTGGATCTACGGTTCGCCGAAACTGGCCCGCTACAACGGCGTGGAAGCGGTGGAAGTCCTGGGTGCCCCGGCGCCGGGCTACA GTACCGGTGAAGCCATGGCCGAAGTCGAAGCCATCGCCAAGAAGCTGCCGGCCGGTGTCGGTATCTCCTGGACCGGCCTGTCCTACGAGGAACGCCTGTC GGGCTCGCAAGCGCCTGCGCTGTACGCCTTGTCGCTGCTGATGGTGTTCCTGTGTCTGGCGGCGCTGTATGAAAGCTGGTCGATTCCGATCGCGGTCATG CTGGTGGTGCCGCTGGGGATCATCGGTGCGCTGATGGCGACCAGCCTGCGCGGTCTGTCCAACGACGTGTACTTCCAGGTGGGGCTGTTGGTGACCATCG GTCTGGCGGCGAAAAACGCCATTCTGATCGTCGAATTCGCCAAGGAACTGCACGAACAGGGCCGCAGCCTGGTGGACGCGGCGATCGAAGCCTGCCGCAT GCGTCTGCGTCCGATCATCATGACCTCCCTGGCCTTCGTGCTCGGTGTGGTACCGCTGGCCATCTCCACCGGCGCAGGCTCGGGTAGCCAGCATGCGATC GGTACCGGGGTGATTGGCGGTATGCTCACCGCGACTGTCCTGGCAATATTCTGGGTACCTTTGTTCTTCGTCACCGTGTCCAAGATGGGCCGCCGCAAGG CAGACGAAGCGCAAACTACTGAAACTCCTGAAGAGGCTGGCCAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAAGTCGCTACTCTCCCTCGCAATCACCGCCGCCGTGCTGAGTGGTTGCTCGCTGATACCGGATTATCAGCAGCCGCAAGCGCCGGTCGCGGCGCAATA CCCGCAAGGGCCGGCCTATTCGCCTGCGGAGGCAGCCAACCAGGCAGCCGCCGAACAGGGCTGGCGGCAGTTTTTCCATGACCCTGCCCTGCAGCAGCTG ATCCAGACCGCGCTGGTGAACAACCGCGACCTGCGGGTCGCGGCGCTGAACATCGACGCCTACGCCGCGCAGTACCAGATCCAGCGCGCGGACCTGTTCC CGGCGATTTCGGCCAACGGCAGCGGCAGTCGTCAACGTACCCCGGCGCGGATGTCGCAGACCGGTGAAGCGGCCATCTCCAGCCAGTACTCGGCAACCCT GGGTATCAGCGCTTACGAGCTGGACCTGTTCGGTCGCGTTCGCAGCTTGAGCGAGCAGGCCTTGCAGACCTACTTCTCCAGCGAAGAAGCCCGGCGCAGC
|
|
| Amino Acid Sequence |
>multidrug transporter
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNS DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLLVIGVVSEDGSMSKDDLSNYIVSNMQDPISRTAGVGDFQVFGAQYAMRIWLDPAKLNNFNLTP VDVKNAVAAQNVQVSSGQIGGLPALPGQQLNATIIGKTRLQTAEQFKAILLKVNADGSQVRLGDVADVALGGENYSVSAQFNGAPASGLAVKLANGANAL DTAKALRKTISDLEPFFPQGMKVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAAGFSINTLTMFGMVL AIGLLVDDAIVVVENVERVMAEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITVVSAMALSVLVALIFTPALCATMLKAI PHGEHAAPKRGFFGWFNRTFDRSVKSYERGVGNILRHKAPYLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSSERTQVVVDEMRAYLLD KEKDTVASVFTVNGFNFAGRGQSSGMAFIMLKPWDERSVDNSVFNLAARAQQHFFSFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHEKLMEARNQ FLGMAAQSKILSQVRPNGLNDEPQYQLEIDDEKASALGVTISDINNTLSIALGSSYVNDFIDRGRVKKVYIQGQPNARMSPEDLKKWYVRNSAGTMVPFA SFAKGTWIYGSPKLARYNGVEAVEVLGAPAPGYSTGEAMAEVEAIAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWSIPIAVM LVVPLGIIGALMATSLRGLSNDVYFQVGLLVTIGLAAKNAILIVEFAKELHEQGRSLVDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAI GTGVIGGMLTATVLAIFWVPLFFVTVSKMGRRKADEAQTTETPEEAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|