Pseudomonas chlororaphis YL-1, P637_RS0101610
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis YL-1 contig12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGAGCCGAAAACCGGCTTCATGCTCATCGACACCCTGCTGGCCGATGACACCAGCGCCTTCTTCGACGCCCTGCACCACCTGATCCTGCCGGCCATCG TGCTCGGCACCATTCCGCTGGCGGTGATCGCACGGATGACCCGTTCCTCGATGCTCGAAGTGCTGCGCGAAGACTACATCCGCACCGCCAAGGCCAAGGG CCTGTCGCCCGCCCGCGTGGTGTTCGTGCACGGCCTGCGCAACGCGCTGATCCCGGTGCTGACCGTGGTCGGCCTGCAAGTCGGCACCCTGCTGGCCGGC GCGGTCCTGACCGAAACCATCTTCTCCTGGCCCGGCATCGGCAAATGGCTGATCGAAGCCATCGGCGCCCGGGACTACCCCGTGGTGCAGAACGGCATCC TGTTGATCGCCTGCCTGGTGATCCTGGTCAACTTCGTGGTGGACATCCTCTACGGCTTTGCCAACCCACGCATTCGCCACCAGCGCTGAGGACAATACTC
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| DNA Sequence for Gene |
>P637_RS0101610
ATGAGCACTCCAACCTCCTCAGTAGCCGTATCCGCCGTGGCCGTGGATCAAAGCCTGCTGTACCCCTCGCCGTACAAGGAATTCTGGCAGGCGTTCTCGC GCAACAAGGGCGCGGTGGCCGGCCTGCTGTTCATGCTGCTGGTGATCTTCTGCGCGATCTTCGCGCCCTGGGTCGCCCCGCATAACCCGAGCGAGCAATA CCGCGACTTCCTGCTGACCCCGCCGGTCTGGCTCGAAGGCGGCCAATGGCAATTCATCCTCGGCACCGACGAACTGGGCCGTGACCTGCTGTCGCGCCTG ATCACCGGTTCGCGCCTGTCGCTGCTGATCGGCCTGTCGTCGGTGGTCATGTCGCTGATCCCGGGCATCCTCCTGGGCCTGTTCGCCGGGTTCTTCCCGC GCCTGCTCGGGCCGACCATCATGCGCCTGATGGACATCATGCTGGCCCTGCCGTCCCTGCTGCTGGCCGTGGCGATCGTCGCCATCCTCGGCCCAGGCCT GATCAACACCGTGATCGCCATCGCCGTGGTATCGCTGCCGTCCTACGTGCGCCTGACCCGCGCCGCGGTGATGGGCGAGCTCAACCGCGACTACGTGACC GCTGCGCGCCTGGCCGGTGCCGGCCTGCCGCGCCTGATGTTCATCACCGTGCTGCCCAACTGCATGGCGCCGCTGATCGTCCAGGCGACCCTGAGCTTCT CCTCGGCGATCCTCGATGCCGCGGCCCTGGGCTTCCTCGGCCTTGGCGTCCAGCCGCCCACCCCTGAGTGGGGCACCATGCTGGCCTCGGCCCGCGACTA CATCGAACGCGCCTGGTGGGTGGTGAGCCTGCCCGGTCTGACCATTTTGCTCAGCGTGCTGGCAATCAACCTGATGGGCGACGGCTTGCGCGATGCGCTG GACCCGAAACTCAAGAACGCCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAGATTCCCATGTCACTGCTAGAAATCAAGAATCTCAACGTGCGCTTCGGCGACGCCCAGGCCGTTCCCGTGGTGGATGGCCTGGACCTGAACGTGGAC AAGGGCGAAGTCCTGGCCATCGTCGGCGAATCCGGCTCCGGCAAGTCCGTGACCATGATGGCGCTGATGGGGCTGATCGAGCATCCCGGCATCGTCACCG CCGACGCCCTCAGCTTCGACGGCAAGGACATGCTCAAGCTCAGCGCCCGGCAACGCCGGCAGATCGTCGGCAAGGACCTGGCCATGGTCTTCCAGGACCC GATGACCGCGCTGAACCCGAGCTACACCGTGGGCTTCCAGATCGAGGAAGTGCTGCGCCTGCACCTGAAGATGTCCGGCAAGGCGGCCCGCAAGCGCGCC ATCGAACTGCTGGAAAAAGTCGAGATCCCGGGCGCCGCCAGCCGCATGGACGCCTACCCGCACCAACTGTCCGGCGGCATGAGCCAGCGCGTGGCGATTG
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| Amino Acid Sequence |
>peptide ABC transporter
MSTPTSSVAVSAVAVDQSLLYPSPYKEFWQAFSRNKGAVAGLLFMLLVIFCAIFAPWVAPHNPSEQYRDFLLTPPVWLEGGQWQFILGTDELGRDLLSRL ITGSRLSLLIGLSSVVMSLIPGILLGLFAGFFPRLLGPTIMRLMDIMLALPSLLLAVAIVAILGPGLINTVIAIAVVSLPSYVRLTRAAVMGELNRDYVT AARLAGAGLPRLMFITVLPNCMAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDAL DPKLKNAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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