Strain | Pseudomonas aeruginosa CF_PA39 scaffold16, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GTCAAGCGGCACACGGTGAACTCCGAGTTCGACATCAAGCAGATCTCCGCGCTGGCTCCGGTGGAAATCGCCTACAGCTACGGCAACGTCAGCGACACCG CCTACAAGGCCCTGGCCCAGGCCGGCGCCAAGGCGATCATCCATGCCGGCACCGGCAACGGCTCGGTGCCCGCGCGCGTGGTGCCGGCCCTGCAGGAACT GCGCAAGCAGGGCGTGCAGATCATCCGTTCCTCGCACGTCAACGCCGGCGGCTTCGTCCTGCGCAACGCCGAGCAGCCGGACGACAAGAACGACTGGATC GTCGCCCACGACCTGAACCCGCAGAAGGCACGCATCCTGGCCGCGGTCGCGATGACCAAGACCCAGGACAGCAAGGAATTGCAGCGGATCTTCTGGGAAT ACTGAGTGAACCTTCCCGGCGCCGCCTGCCGGCCGCGCCGGAAAACCGCCCGTTCCGCCGCCCATCGTGGCGGCGGACTGGCCTAGCCGCGACGACTGTG
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DNA Sequence for Gene |
>AX20_RS0115165
ATGGAATCCCCCGATCCGCCCTGCGTACCTCCGTCACTGACCGTGAAGCCCCGCCTCGTCCGCCAGCTGCTGCTCCCCATCCCCCTGCTCCTGCTGATGC TCGGCTTCGGCTACGGCGGCTACCGGATCAGCGAGAACGCCGGCATCCGTGCCCTCGCCGAGAATGGCGAGCGCCAGCTGGAGCTGCATGCGCGGACGGT CGAGAGCGAGATCAGCAAGTACACCTACCTGCCCAGCCTGCTGGAGCTGGAGCGCAGCGTCAGCCACCTGCTCACCGACCCGACGCCATACCGCCGCAAC CAGGTCAACGCCTACCTCGAAGGCCTCAACCGCCGCGCCGGCAGCCGCGCGGTGTACCTGCTGGATACCAACGGCCGGGTCCTGGCCACCAGCAACTGGA GCGACCCGGACAGTTACCTCGGCGAGGACCTGTCGTTCCGCGCCTACTGGCAGGACGCGATGAAGGGCAAGCCGGGACGCTTCTACGGCATCGGCAGCAC CCGCGGCGAGCCGGGCTACTACCTGGCCCACGGCCTGGTCCACGGCGGCCGGATCATCGGCGTGGCGGTGGTCAAGGTGAAGATGGACGCCCTCGAGGAA CGCTGGGAGAAGGCGCGCCTGGAAGCCTTCGTCAGCGACGAGAACGGCATCATCATCCTCTCCAGCAACCCCGCCCTGCGCCTGAAGGCGGTGCGCTCCC TGAGCGCCGACGACAAGGAGCGCCTGGCGCGCAGCATGCAGTACTACTGGTGGGCGCTGAACGAGTGGCAGCCGCTACAGCGCGAGCCGCTGGCCGCCGG AGTGGAGAAGCTCAGTTTCCCTGCCGATGAGCAGCATCCGCGCGGCGAAGCGGTCTCCTACCTGGCGCAGACCCGCGCGCTGAACGACACGCCGTGGAAC CTGACCCTGCTCAGCCCGCTGGAAGACCTGCGCCGCGACGCGGTACGCAACGGCATGCTGGCCGCCATCGGTTTCGCCCTCCTGGCATTCCTGCTGATCG CCTGGAACGAGCGGCGCAAGGTACTCGCCACCCGCCTGGCCGCGCGCGAGGCGCTGCAACGTGCCAACGGCGAGCTGGAAGTGAAGATCGCCGAACGCAC CGCCGACCTGCAAGCCAGCAACGCACGCCTGACCGCCGAGATCCACGAACGCCAGCAGGCCGAGGACACCCTGCGCAAGGCCCAGGACGAACTGGTCCAG GCCGGCAAGCTGGCGGTGATCGGACAGATGTCCACCAGCATCGCCCACGAACTCAACCAACCGCTGGCGGCACTGCGTACGCTGTCCGGCAACACCGTGC GCTTCCTCCAGCGCGGCAAGCTGGAGACCGCCAGCACCAACCTCGCCACCATCAACGAACTGGTCGACCGCATGGGCCGCATCACCGCCAGCCTGCGTGC CTTCGCCCGGCGCAGCGACGACGCCGGCCAGGCCAGCCTGGCCAAGGCGGTGGACGCGGCGCTGCTGATCCTGCACGGACGCCTGGAGCAGGACCCGCCG ACCCTGCACCGGCATTTCGACGACGTGCGCCTGGGCATCGACCAGACCCGCCTGGAGCAGATCCTGGTCAACCTGCTGGCCAACGCCCTCGACGCCATGA GCGGCCAGGCCGACCGCCAGCTCTGGCTGGAAGGCCGGCGCGAGGAGGAGCGCTACGTCCTGCGCGTGCGCGACAACGGCCCCGGTATCCCGCCGGCAGC GCGCGTCCATCTGTTCGAACCCTTCTTCACCACCAAGCCCGGCGAACATGGCCTGGGCCTCGGCCTGACCCTCTCGGCCAGCCTCGCCACCGCCGCCGGC GGCAGCCTCAGCGTGCAGCACCCCGAAAGCGGCGGAACCGCCTTCGAGCTGAGCCTGTCCCTGGTTCCCGATTCCCCGACTGCGAGTCCCGCCCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ACGAGCCGCTTTCCGTCCTGATCGTCGAAGACGATCCGCATGTCTTGCTCGGCTGCCAGCAGGCGCTGGAGCTGGAGGACATCCCCTGCATCGGCGTCGG CAGCGCCGAGGAGGCACTGCAACGGGTCGACCGCGATTTCGCCGGCATCGTCGTCAGCGACATCCGCCTGCCCGGCATCGACGGCCTGACCCTGCTGGAG CGTCTCAAGGCCCTCGACCCGAGCCTGCCGGTGGTGCTGATCACCGGCCACGGCGACATCTCCATGGCGGTACAGGCGATGCATGCCGGCGCCTACGACT TCATGGAGAAGCCTTTCTCTCCGGAACGCCTGGTCGAGGTCGCCCGCCGCGCCCTGGAACAGCGCGGGCTGGCCCGCGAGGTCAGCGCGCTGCGTCGCCA GCTGGCCGGCCGCCAGGATTTGGCGCAACGGATCATCGGCCGCTCGCCGGCGATCCAGGCGTTGCGCGAGCTGATCGCCAACGTCGGCGACACCTCGGCC
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Amino Acid Sequence |
>histidine kinase
MESPDPPCVPPSLTVKPRLVRQLLLPIPLLLLMLGFGYGGYRISENAGIRALAENGERQLELHARTVESEISKYTYLPSLLELERSVSHLLTDPTPYRRN QVNAYLEGLNRRAGSRAVYLLDTNGRVLATSNWSDPDSYLGEDLSFRAYWQDAMKGKPGRFYGIGSTRGEPGYYLAHGLVHGGRIIGVAVVKVKMDALEE RWEKARLEAFVSDENGIIILSSNPALRLKAVRSLSADDKERLARSMQYYWWALNEWQPLQREPLAAGVEKLSFPADEQHPRGEAVSYLAQTRALNDTPWN LTLLSPLEDLRRDAVRNGMLAAIGFALLAFLLIAWNERRKVLATRLAAREALQRANGELEVKIAERTADLQASNARLTAEIHERQQAEDTLRKAQDELVQ AGKLAVIGQMSTSIAHELNQPLAALRTLSGNTVRFLQRGKLETASTNLATINELVDRMGRITASLRAFARRSDDAGQASLAKAVDAALLILHGRLEQDPP TLHRHFDDVRLGIDQTRLEQILVNLLANALDAMSGQADRQLWLEGRREEERYVLRVRDNGPGIPPAARVHLFEPFFTTKPGEHGLGLGLTLSASLATAAG GSLSVQHPESGGTAFELSLSLVPDSPTASPAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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