Pseudomonas aeruginosa CF_PA39, AX20_RS0114860
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa CF_PA39 scaffold16, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGGCGTTCATGGACTGCACCTCGCAGTCGAGCCTGGCGGCCTGTAGCAACCGGCCCGGACTGATCGTGCTGCGCTCGTTCGGCAAGTTCTTCGGCCTG GCCGGCGCGCGGCTCGGCTTCGCCCTCGGCGAACGGCCGCTGTTGCAGGCGCTGGCCGAGCAGCTCGGCCCGTGGACGGTCAATGGCCCGGTGCGCCATG TGGCCCAGAGCGCCTTGCGCGACCGCCAGCAACAGCGCCAGCAGCGCGAGCGCCTGCTGGCCGCCAGCCAGCGCCTGGAGGAATTGCTGCGCCGCCATGG CTGGCCGCCGGCGGGTGGCAGCGCGCTGTTCCAGCGTCTGGTCGATCCACGCTGTGCGGCGTTGCACGACTACCTGGCGCGGCGCGGCATCCTCACCCGC CAGTTCGAGCAGCCGGCCAGCCTGCGCCTCGGCCTGCCCGCCGACGAAGCCGCCTGGGCCCGGCTGGATGCCGCGCTGCTCGGCTTCAAGGAGCCTGCTC
|
|
| DNA Sequence for Gene |
>AX20_RS0114860
ATGAGTGATCGCGGGCGGACCCTGATGGTCCAGGGCACCACCTCGGACGCCGGCAAGAGCACCCTGGTGACCGCGCTGTGCCGCTGGCTGGCCCGGCGCG GCGTCGCGGTGGTTCCGTTCAAGCCGCAGAACATGGCGCTGAACAGCGCGGTCACCGCCGACGGCGGCGAGATCGGCCGCGCCCAGGCGGTCCAGGCCCA GGCCTGCCGGCTGGCGCCGCACACCGACATGAACCCGGTGCTGCTCAAGCCGAACACCGACATCGGCGCCCAGGTGATCATCCATGGCCGCGCGGTGACC AGCATGGACGCCGCCGCCTATCACGACTACAAGCGCGTGGCGATGGAAGCGGTGCTGGCTTCCCATGGGCGGCTCGCCGCCGCCTACCGGGTGGTGATGG TGGAGGGCGCCGGCTCGCCGGCGGAGATCAACCTGCGCGCCAACGACATCGCCAACATGGGCTTCGCCGAAGCGGTGGATTGCCCGGTGATCCTGGTCGC CGATATCGACCGCGGCGGGGTCTTCGCCCACCTGGTCGGCACCCTGGAACTGCTCTCCGAGTCGGAGCGGAAGCGGGTCAAGGGCTTCGTCATCAATCGC TTCCGCGGCGACATCGCCCTGCTGCAACCCGGCCTCGACTGGCTGGAGGCGCGCACCGGCAAGCCGGTGCTCGGCGTGCTGCCCTATGTCAGCGACCTGC ACCTGGAGGCGGAGGATGCCATCGATACGCGCCAGGCGGCCAAGGCCGGGCCGCGCCTGAAGGTGGTGGTGCCGGTGCTGCCGAGGATCAGCAACCACAC CGATTTCGATCCGCTGCGCCTGCATCCCCAGGTCGAGTTGAGCTTCGTCGGCCCCGGCCAGGCGCTGCCGCCGGCGGACCTGATCGTCCTGCCCGGCTCG AAGAGCGTGCGCGCCGACCTCGCGGCGCTGCGCGAGCGCGGCTGGGACGAGGCGATCCTCCGCCACCTGCGCTACGGCGGCCGCCTGCTGGGGATCTGCG GCGGCCTGCAGATGCTCGGCGAGCGCCTGCACGATCCGCTCGGGCTGGAAGGCGCGGCCGGCAGCAGCGCTGGCCTCGGCCTGCTGGCGTTGGAGACGAC CCTGGAGGCGGACAAGCAATTGCGCAACGTACAGGGCCGCCTGAGCCTGGAGGATGCGCCGCTGTCGGGCTACGAGATCCATGCCGGGGTCACCCGTGGC GAGGCCCTGGCGCGGCCGGCGGTGGTGCTCGACGATGGTCGCGCGGAGGGGGCCCGCAGCGTCGACGGGAACGTCATGGGCACCTACCTGCACGGCCTGT TCGAATCCACCGCGGCCTGTTCGGCGCTGCTGCGCTGGGCCGGCCTGCGCGAGGTCCAGGCGGTGGACTACCGGGCCTTGCGCGAACGCGACATCGAGCG GCTCGCCGACCTGGTCGAGCGCCACCTGGATACCGGGCGATTGCTCGCCCTTTGCGGAGAACCCCATGCGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCTGATCCTTGGCGGTGCCCGTTCCGGCAAGAGCCGCCTGGCCGAGCGCCTGGCCGCCGAGAGCGGGCTGGCGGTGAGCTACATCGCCACCGCCCAGGCC GGCGACGGCGAAATGCGCCGGCGCATCGCCGAGCACCGCGCGCGCCGCCCGGCCCACTGGCGAACCCTGGAAGAGCCCCTGGCGCTGGCGGCGACGCTGC GCAGCGAGGCCGAGGCCGGACGCTGCCTGCTGGTCGACTGCCTGACCCTGTGGCTGACCAACCTGCTGCTCTGCGACGATCCCCAGCGTCTCGACGGCGA GCGCGAGGCGCTGCTGGAATGTCTCGGCGAGCTACCGGGACGGATCATCCTGGTCAGCAACGAAACCGGGCTCGGCGTGGTGCCGCTGGGCGAACTCAGC CGGCGCTACGTCGACGAGGCCGGCTGGCTGCACCAGGCCATCGCCGAACGCTGCGAGCGGGTGACCTTCACCGTCGCCGGCCTGCCCATGCCGTTGAAAG
|
|
| Amino Acid Sequence |
>cobyric acid synthase
MSDRGRTLMVQGTTSDAGKSTLVTALCRWLARRGVAVVPFKPQNMALNSAVTADGGEIGRAQAVQAQACRLAPHTDMNPVLLKPNTDIGAQVIIHGRAVT SMDAAAYHDYKRVAMEAVLASHGRLAAAYRVVMVEGAGSPAEINLRANDIANMGFAEAVDCPVILVADIDRGGVFAHLVGTLELLSESERKRVKGFVINR FRGDIALLQPGLDWLEARTGKPVLGVLPYVSDLHLEAEDAIDTRQAAKAGPRLKVVVPVLPRISNHTDFDPLRLHPQVELSFVGPGQALPPADLIVLPGS KSVRADLAALRERGWDEAILRHLRYGGRLLGICGGLQMLGERLHDPLGLEGAAGSSAGLGLLALETTLEADKQLRNVQGRLSLEDAPLSGYEIHAGVTRG EALARPAVVLDDGRAEGARSVDGNVMGTYLHGLFESTAACSALLRWAGLREVQAVDYRALRERDIERLADLVERHLDTGRLLALCGEPHA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|