Pseudomonas aeruginosa CF_PA39, AX20_RS0112680 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa CF_PA39 scaffold12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGTATTCGAGGAAACCCTCGCCGAATTGGTTTCACTGGATGACCTGACCCTTAGCTACTACCGAGGCTGGGACAAGGACCGGGACCTCCTGGAGGTCC TGGCTTCCAGCCTGTTACGCGACCAGCAGATGGGCCACACCCAGGCGGGACCGCAGCGTGCGGATCTTCGCATACGGTTGGCAGGTCATAACGCCGCGGA GATTCTCTCGCGCGGTCAGCAGAAGCTGGTGGTATGCGCCCTGCGCATCGCCCAGGGGCATCTGATCAATCGCGCCAAGCGCGGGCAGTGCGTCTACCTG GTGGACGACCTGCCTTCGGAACTGGATGAGCAGCATCGAATGGCTCTTTGCCGCTTGCTTGAAGATTTGGGTTGCCAGGTATTCATCACCTGCGTGGACC CGCAACTATTGAAAGACGGCTGGCGCACGGATACGCCGGTAGCCATGTTCCACGTGGAACATGGAAAAGTCTCTCAGACCACGACCATCGGGAGTGAAGC
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| DNA Sequence for Gene |
>AX20_RS0112680
|gyrB
ATGAGCGAGAACAACACGTACGACTCTTCCAGCATCAAGGTGCTGAAGGGGCTGGATGCCGTACGCAAGCGCCCCGGCATGTACATCGGCGACACCGACG ATGGCACCGGTCTGCACCACATGGTGTTCGAGGTGGTGGATAACTCCATCGACGAAGCGCTGGCCGGCTACTGTAGCGAAATCAGCATCACCATCCATAC GGACGAGTCGATCACCGTCCGCGACAATGGACGCGGTATTCCGGTGGATATCCACAAGGAAGAAGGGGTTTCTGCGGCGGAAGTGATCATGACCGTCCTC CATGCCGGCGGCAAGTTCGACGACAACACCTACAAGGTGTCCGGCGGCCTGCACGGTGTGGGCGTCTCGGTGGTGAATGCGCTATCCCATGAATTGCGCC TGACCATCCGCCGCCACAACAAGGTCTGGGAACAGGTCTACCACCATGGCGTGCCGCAATTCCCGCTGCGCGAAGTGGGCGAAACCGATGGTTCCGGTAC CGAGGTGCATTTCAAGCCATCCCCCGAGACCTTCAGCAATATCCACTTCAGTTGGGACATCCTGGCCAAGCGTATCCGCGAGCTGTCCTTCCTCAACTCC GGCGTCGGCATCCTGCTGCGCGACGAGCGTACCGGCAAGGAGGAGCTGTTCAAGTACGAGGGCGGCCTGAAGGCCTTCGTCGAGTACCTGAACACCAACA AGAGCGCGGTGAACCAGGTCTTCCACTTCAACGTCCAGCGTGAAGAGGACGGTGTGGGCGTGGAAGTTGCCCTGCAGTGGAACGATAGCTTCAACGAGAA CATCCTCTGCTTCACCAACAACATCCCGCAGCGCGACGGCGGCACCCACCTGGCGGGCTTCCGCTCGGCGCTGACGCGTAACCTGAACAACTACATCGAG GCCGAGGGCCTGGCGAAGAAATTCAAGATCGCCACCACCGGCGACGATGCCCGCGAAGGCCTCACCGCGATCATCTCGGTGAAGGTGCCGGACCCGAAGT TCAGCTCGCAGACCAAGGACAAGCTGGTCTCCTCCGAGGTGAAGACCGCAGTGGAACAGGAAATGGGCAAGTACTTCGCCGACTTCCTGCTGGAGAACCC CAACGAAGCCAAGGCCGTGGTCGGCAAGATGATCGACGCTGCCCGCGCCCGCGAAGCGGCGCGCAAGGCCCGCGAGATGACCCGCCGCAAGGGCGCGCTT GACATCGCCGGCTTGCCCGGCAAGCTGGCCGACTGCCAGGAAAAGGACCCGGCGCTCTCCGAACTGTACATCGTGGAGGGTGACTCCGCGGGCGGCTCCG CCAAGCAGGGCCGCAACCGCCGGACCCAGGCGATCCTGCCGCTCAAGGGCAAGATCCTCAACGTCGAGAAGGCGCGTTTCGACAAGATGCTCTCTTCCCA GGAGGTCGGTACGCTGATCACCGCCCTGGGCTGTGGCATCGGCCGCGAGGAGTACAACATCGACAAACTGCGCTACCACAACATCATCATCATGACCGAT GCTGACGTCGACGGTTCGCACATCCGTACCCTGCTGCTGACCTTCTTCTTCCGCCAGATGCCCGAGCTGATCGAACGCGGCTACGTGTACATCGCCCAGC CGCCGCTGTACAAGGTCAAGCGCGGCAAGCAGGAGCAGTACATCAAGGACGACCAGGCCATGGAAGAGTACATGACCCAGTCGGCCCTGGAAGACGCCAG CCTGCACGTCAACGAGCACGCTCCGGGCCTGTCCGGCGCGGCGCTGGAGAAGCTGGTCAACGAGTACCGCGGCGTGATCGCCACCCTCAAGCGCCTCTCG CGCCTGTACCCGCAGGAGCTCACCGAGCACTTCATCTACCTGCCTACGGTGTCGGTGGACGACCTGGCCAACGAATCGGTGATGCAGGGCTGGCTGGAGA AATTCCAGGCACGCCTGACCGCTGCGGAGAAGTCCGGCCTGACCTACAAAGCCAGCCTGCGCGAAGACCGCGAACGCCACCTGTGGCTGCCCGAGGTGGA ACTGGTGGCCCACGGCCTGTCCAGCTACGTCACCTTCAACCGCGACTTCTTCGCCAGCAACGACTACCGCTCGGTGTCTCTGCTCGGCGACCAGCTGAAC AGCCTGCTGGAAGATGGCGCCTACGTGCAGAAGGGCGAGCGCAAGCGCCCGATCAGCGCCTTCAAGGACGGCCTGGACTGGCTGATGGCCGAAGGCACCA AGCGCCATAGCATCCAGCGATACAAGGGGCTGGGCGAGATGAACCCTGAGCAGCTGTGGGAAACCACCATGGATCCGAACGTCCGTCGCATGCTCAAGGT GACTATCGAGGACGCCATCGCCGCCGACCAGATCTTCAACACCCTGATGGGCGATGCCGTGGAGCCGCGCCGCGACTTCATCGAAAGCAACGCGCTGGCG GTGTCGAACCTGGACGTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGGTCGTGTCGAGGGGCACATTAGATGTCCCAAATGGGCGGGTTAATGTCCCATTTCATGAAGCACAAACCCCGGCATAAAGCCGGGGTTTTTCTTTAT ATAACAGGCAGATACTGTTATCCCTATCGGCCCCAGCTTTCCTCGGCCAACATGCTCCCATTGAGCTGATCACGATAAGTCCTCCATTGCGGCAGGTGTT GATCTAACAGAGCCTGGAAGCGTTCGTTATGGTGGCGCTCCAAGAGGTGTGTCAGTTCGTGAACAAGGATGTACTCCAGGCACTGAACGGGCTTCTTGGC CAGTTCTAGATTGAGCCAAATGCGCCTGGCTTCGATGTTGCAGGTGCCCCACTTGGTCTTCATCCGTTTGATGCCCAAAGCTCGCACTTCAACGCCTAAC CTCGGTTGCCACTTATCCAGTAGTTCCGGCACCAGGCGCTTCAACTCGACCCGATAGAAGTCGTGCAGTACCTGCTCGCGCCGTTCAGGGCTGGTCTCAG
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVL HAGGKFDDNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGETDGSGTEVHFKPSPETFSNIHFSWDILAKRIRELSFLNS GVGILLRDERTGKEELFKYEGGLKAFVEYLNTNKSAVNQVFHFNVQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNNYIE AEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGAL DIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTD ADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGLSGAALEKLVNEYRGVIATLKRLS RLYPQELTEHFIYLPTVSVDDLANESVMQGWLEKFQARLTAAEKSGLTYKASLREDRERHLWLPEVELVAHGLSSYVTFNRDFFASNDYRSVSLLGDQLN SLLEDGAYVQKGERKRPISAFKDGLDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNALA VSNLDV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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