Pseudomonas aeruginosa CF_PA39, AX20_RS0108080
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa CF_PA39 scaffold6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGTTCCAGGGACTTGATCCGCGAGATAACGGTCAGGCCATCGAGCTTCGGAATGCCGATGTCGAGAATCACCACGTCCGGCTCGTGCTCCCGGACCAA CTGGATGGCATCCACGCCATTGTCCGTCTCGGCCACCACCTGCAAACCATGCTTTTCCAGCAGGACGCGCACGGCGAGGCGAATGACGGGGTGGTCGTCG ACGATCAGGACGGTATGCATAAATTCGATTTACCTTGAGGAACCGGGGGCAGGCTCGGGTTCGATTCCCGGGCGCTGCCGCCGGTAGTCATCCATGTTGG GCGCTAGGCCGATATCGCCGTCCAGAATAGCCTGTTAAGGCGGGGCGATTCGGTTTTTCATGTGGATCCATGCTAATCCAACCGAACCTCCAAATCAGTA GGAAAATTCCCACAAAACATGGGGACTTGTCCCATAGGTCTAGTAAGGGAAACACAGCAGTATATCGCCGGTATTTCCTGGAAACCCTGTGTGGACCGTG
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| DNA Sequence for Gene |
>AX20_RS0108080
ATGAATGATTTGAATGTTCTGGTGTTGGAGGATGAGCCTTTTCAGCGCCTGGTAGCCGTCACAGCCCTGAAGAAAGTGGTACCCGGATCGATCCTCGAAG CGGCGGACGGCAAGGAGGCGGTGGCGATCCTGGAGTCCTGCGGACACGTGGACATCGCCATCTGCGACCTCCAGATGAGCGGCATGGACGGCCTGGCGTT CCTTCGCCACGCAAGCCTGAGCGGCAAGGTCCATTCGGTGATCCTCAGCAGCGAGGTGGATCCCATCCTGCGCCAGGCCACCATTTCGATGATCGAGTGC CTGGGCCTCAATTTTCTCGGCGACCTCGGCAAGCCATTCAGCCTGGAGCGGATCACCGCCCTGCTGACCCGCTACCACGCTCGCCGCCAGGACCTGCCAC GACAGATCGAAGTCGCCGAGTTGCCGTCCGTGGCGGATGTGGTGCGCGGCCTCGACAACGGCGAATTCGAAGCCTACTACCAGCCAAAGGTGGCCCTGGA TGGCGGCGGCCTGATCGGCGCCGAGGTCCTGGCACGCTGGAACCACCCGCATCTCGGCGTACTGCCGCCGTCGCATTTCCTCTATGTGATGGAAACTTAC AACCTGGTCGACAAGCTGTTCTGGCAACTCTTCAGCCAGGGGCTGGCGACGCGCAGGAAGCTGGCGCAACTGGGGCAGCCGATCAACCTGGCTTTCAACG TCCATCCTTCGCAACTGGGTTCGCGCGCGTTGGCCGAGAACATCTCGGCGCTGTTGACCGAGTTCCACTTGCCGCCCAGCTCGGTGATGTTCGAGATCAC CGAGACCGGATTGATCAGCGCCCCCGCCAGCAGCCTGGAGAACCTGGTACGCCTGCGGATCATGGGTTGCGGTCTGGCGATGGACGATTTCGGCGCCGGT TATTCCTCCCTCGACCGGCTCTGCGAGTTTCCCTTCAGCCAGATCAAGCTCGACAGGACCTTCGTCCAGAAGATGAAGACCCAGCCCAGGAGCTGCGCGG TCATCAGCAGCGTCGTGGCACTGGCGCAGGCGCTGGGAATTTCCCTGGTGGTGGAAGGGGTGGAGAGCGACGAACAACGGGTACGCCTGATCGAACTCGG TTGCTCCATAGCCCAGGGCTACCTGTTCGCCCGGCCGATGCCGGAACAGCACTTTCTCGATTATTGCTCCGAATCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCCGCCGCGCTGGCCGAGGCCAGCGGTAGCCGAACGCCGGGCCTCGCGCCGGACGCGTTTCCTTTCCATACAACTGCCGGCCCTGCCGCACAGACCTTC CATGCGATCAAGACTATTCCTGCTGTTCTTCTGCCTGCTGCTGTCGGGCGGACGCCTGTTCGCCGTCGAAGCGCATCCGTCCCTGACGCTGTTCAGCCAG TTGCGCATCGAACACGAGGACATGGCGATCGCCGAGGACGACTGGGCCTGGCTGCGCCACAAGGGGCACCTGAAGCTCGGTGCGGCGCTGGACGAGACCT CGCCCTTCAACGTCCGGCTCGACGACGAGAACTACGAAGGCATAACGGCGGACGTCGCCACCCTGGTCGGGCAGTTGCTCGGCATGCGCATCAAGGTCAT GAGTTTCGATACCCATGCGGAAGCCGTGGCGGCGCTCGCCGCCGGAAAGATCGACCTGCTTGGCAGCCATTACAGTTCGGCGGGCGATTCCTCCCTGGTA
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MNDLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVILSSEVDPILRQATISMIEC LGLNFLGDLGKPFSLERITALLTRYHARRQDLPRQIEVAELPSVADVVRGLDNGEFEAYYQPKVALDGGGLIGAEVLARWNHPHLGVLPPSHFLYVMETY NLVDKLFWQLFSQGLATRRKLAQLGQPINLAFNVHPSQLGSRALAENISALLTEFHLPPSSVMFEITETGLISAPASSLENLVRLRIMGCGLAMDDFGAG YSSLDRLCEFPFSQIKLDRTFVQKMKTQPRSCAVISSVVALAQALGISLVVEGVESDEQRVRLIELGCSIAQGYLFARPMPEQHFLDYCSES
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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