Strain | Pseudomonas aeruginosa CF_PA39 scaffold4, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CTCATCCGCATTTCGATCCGCACCCGGACCATGTCCGCGCCCAGGAGGCCGTGCGCGAGGCGCTCCAGGGCCTGGAATGGCAGCCCCAGGCGTTGTTGCA CTATGCCAATCACCTGCATGACAACGATCGCTGGCCGATGGGCGATGCGCACATGGGTGTCAGCCTGCCGCCGCTGACTGAAGAATGCCCGCCGTTGCTG CCATGGGCGCTGGTGCTGGAGCGCACGCGCCAGGTGGACAAGGCCATGGCCTTGGGCATGATGCACGACCTGCAACCCAGGCCGCCGTTCAAGCGCCGTC TGCGCCGCCGCCTACAGGGCTGGCTCGCCGGGCGTCGCTGGCCGGCATATGGCGAGGACGAGTTCATGCGCAAGGCGGTGCGTCGGCACGAGTTGTTCTG GGTGGAGTCGCTGGACGGGGATGCGTGATGCTTCGGTCGAGGGCTCGGCAAGGTTCGAGCCGCCATGCTGCTTCGGAGCAGCCGCGAGGATGAAGGTCTG
|
|
DNA Sequence for Gene |
>AX20_RS0106020
ATGAAAGTTCTGTTTCTGGTCCAGAAAGAGCAGCGCGCGATCCTGGACCGTCTGTACGACGGCATCGCCGCCCATTGCGAGTGCGATACCCGCTGGCTGA GCGGCGAGGAGCAGGCCGACCTGCGCGGCTACTTCCGCAAGCACGTGGATGTCTCGCGCTACGACCGTATCCTGTTCTTCCTCCGCTTCAAGAAGGAAAT GCGCCAGGTCCGCTTCATCCGCAGCGTACCCAACCTGGTGATCCTCGAGCACGATGCCTACCAGAACTACATTCCCTGCAAGTACACCGGAAAGTTCAGC GCCCATTACCGGCGCCTGCCCTGGGCACGGGTGATCAGTTCGGGCCATACGGTCAGCGAACGCCTGCGCCAGGAGGGGTTCGACGCGGTGTTCGTGCCCA AGGGCTACGACCAGACCCTGCTGCATGACCTGGGCCTGGCGCGCGATATCGAGCTGGGCTTCGTCGGCAGTACCGGCAGCGTGGCCTACAGTGGACGCAA GGCGCTGCTCGACGAGTTGGGCGGAGTGGAGAACCTGCTGGTGACCAAGACCAAGTCCGGCGAGGAGTACCTGCGCACGCTCAACCGCATCCGGTTCTTC GTCAGCGCGGATGTCGGCATGGGCGAATACATGATCAAGAATTTCGAGGCGATGGCTTGCGGCTGCGTACTGCTGGCCTACGACCAGGGCGAGCGGGAAA ACGAGGCCCTGGGTTTCCGGGACATGGAGAATATCGTGCTGTACCGCTCGGTGGCGGACATCCAGGAAAAGCTCGCGATCCTGCGCCTGGATACGGCCCT CGCCGAGCGGATCGCACGAAGCGGCCAGGCGCTGGCCATCGAACGATTCAGCTTCGCCGCTGTCGGTCAGAGTATCGTCGAGGCCATGCGGCCCGCATTG CGCGAGCCGGAGCGTCCCGGATGGCTGGAGAAGACCTGGCGACGTATTTTTACCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GAGTAGCAGCCGGGAAGAGCTGGGGCTTTCAGGCGTGTTTGCTATTGTTCAGCTTGTTTTTCCGGGCTGGGGGGAGGTGTAGGACCGATGAAGATCGCAG GATCGCTCATGCATGTCTGGCGCTTTGAATGGGGACGTGAAGGACAGATAAGGTTGTAGTTATGGCGCTCGTCGATGATGGTTCGCAGCCATTGGTTTCC GTGATCATCGCTTCCTATAACCATGAAAAATATATAGAAGCGAGCATCGCCAGTGTGGCTGCGCAGACATACCGCAACGTGGAACTGCTGGTGGTGGACG ACGGTTCCAGCGATGGCAGCGTCGAGCTTTTGCGTGGGCTCCAGGCGAAGTACGGCTTCGACCTCAAGGTCCAGCAGAACCAGGGCCTGTCGAGAACGCT CAATGAGACGATCGCCAGAGCCCGGGGAAATCTCATCGTGCCTTTCGGTTCCGACGACATCATGTTGCCGCAACGCCTGGAGAAGCAGGTGGCGCACATG
|
|
Amino Acid Sequence |
>glycosyltransferase
MKVLFLVQKEQRAILDRLYDGIAAHCECDTRWLSGEEQADLRGYFRKHVDVSRYDRILFFLRFKKEMRQVRFIRSVPNLVILEHDAYQNYIPCKYTGKFS AHYRRLPWARVISSGHTVSERLRQEGFDAVFVPKGYDQTLLHDLGLARDIELGFVGSTGSVAYSGRKALLDELGGVENLLVTKTKSGEEYLRTLNRIRFF VSADVGMGEYMIKNFEAMACGCVLLAYDQGERENEALGFRDMENIVLYRSVADIQEKLAILRLDTALAERIARSGQALAIERFSFAAVGQSIVEAMRPAL REPERPGWLEKTWRRIFT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|