Pseudomonas aeruginosa CF_PA39, AX20_RS0104695
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa CF_PA39 scaffold3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTAGGTCATGCGCGCGGGTTCCTCCGAGGGGCTCTTCGACCAGAAGAACGGCTCGTCCAGTTCGAGGATGTGCCGGGTGACCGGACAGTGCAGAAGAT AGGCATCGCGCTCCTGGGCGCTGCGCCCTTCGGCCCAGTCGCCATGGACGAAGAACAGCTCGTCGATCAGTTCGTTCTCGCTGGGGCGGGGGTACAGGCT ACAGACGATCACCCGGTCGAAGCCCAGGTGTGCGGCGAACGCCACCACCTCGCGGCAGACCGCCTCGGTGGTAGCGGCCTTGCGCAGCCGGGCGACGCTG TCGAAGAGAAGGTTGGCGTAGTCGGTCATGGCGCGGACGTTCCTGGCTTTTCCCGCATGATCCCCGGCTTGCCGGCAAAAGCCCATAGGGGAAAACCCTC AGGCGACCGTCAGTAGATTAGGGGATTTCCCCTATTTCGCCGGCCGGCGACCCCGCCTATCGTCTTGGTGCGACCTTCATCACGCAGAAAGGAACGAGCC
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| DNA Sequence for Gene |
>AX20_RS0104695
ATGAGCAACGAGCGCGATACCAGCAGAACCCCAACACCCGACCACGCCGAGCACAACGCGTTCTTCCCCTCGCCCTATTCCCTGAGCCAGTACACCTCGG CGAAGACCGACTTCGATGGCGCCGACTACCCGACCCCGTACAAGGGCGGCAAGAAGGTGCTGATGATCGGTACCGACGAGCGCTACATCCTGATGCAGAA CGGCAGCATGTTCTCCACCGGCAACCACCCGGTGGAAATGCTCCTGCCGATGTACCACCTGGACAAGGCCGGCTTCGAGTTCGATGTCGCCACGCTCTCC GGCAACCCGGTGAAGCTGGAGATGTGGGCGATGCCCGGCGAGGACGAGGCGGTGAAGAGCATCTACACGAAGTACCTGCCCAAGCTGAAAGCGCCGCAGA AGCTCGCCGACCTCCTGGAGCAGGCCGTCGCCGACGACTCGCCGTACGCCGCGGTGTTCGTTCCCGGCGGCCACGGCGTGCTGGCGGGCATTCCGCACAG CCGGGAGGTGAAACGCCTGCTCAATGCCTTCCTAGCCAAGGACCGCTACATCATCACCCTTTGTCACGGTCCGGCCTGCCTGCTGGCACCGGCGGTGGAC GAGAAGCCGGAGGACTACCCGTTCAAGGACTACGAGATCTGCGTGTTCCCCGATGCCCTGGACACCGGCGCCAACCTGGAGATCGGCTACATGCCCGGTC CCCTGCCCTGGCTGGTGGGCGAGAACCTGCAGAAGCTCGGGGTGAAGATCCTCAACAAGGGCATTACCGGCCAGGTCCACCGCGACCGCAAGCTGCTCAC CGGCGACAGTCCGCTGGCCTCCAACAACCTTGGCAAGCTGGCCGCCAAGACCCTTCTCGAAGCGTTCGCCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCCCCGCCGCGCCCCGTCCGTGACACACGGACGGGAACATCTCCCGCTCGTCCCGGCGTCATCGAACTTAAACCGGCCAGGCGCAGCATCGTCCTTCAG GAAGAGGAATGGCGCGTTGCCCGGGCGCCGTCCGGCGAAAGACGAATCGATGACCGCACAGAAAGAAAACTCTGACAGCACACCGACTAGTCGTCTTCTC CTCCCGCCGTTACGGTTCCGGGCTTGCGCACAAAGCCGAACCCAAGGGGGCCCCTCATGTCATTGCCGCCGTACCTCCAGCCCGGCGACAAGGTCGTGTT GTACGACCAGCACTGCCGCTTCTGCGCGCTCTGGAGCGCTTTCCTGGCACGCCGCGCCGACCACCGGCTGAAATTGCTTGCCGCGCAGTCCGCCGAAGGC CGGGCGATTATCGACTGGTTCGGGCTGGCACCCGATCATTTCGACACCTGGCTGTTCGTCGACGGCGCCTACGCCTGCGACGACAACGACGCCCTGCTCG
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| Amino Acid Sequence |
>chaperone protein HchA
MSNERDTSRTPTPDHAEHNAFFPSPYSLSQYTSAKTDFDGADYPTPYKGGKKVLMIGTDERYILMQNGSMFSTGNHPVEMLLPMYHLDKAGFEFDVATLS GNPVKLEMWAMPGEDEAVKSIYTKYLPKLKAPQKLADLLEQAVADDSPYAAVFVPGGHGVLAGIPHSREVKRLLNAFLAKDRYIITLCHGPACLLAPAVD EKPEDYPFKDYEICVFPDALDTGANLEIGYMPGPLPWLVGENLQKLGVKILNKGITGQVHRDRKLLTGDSPLASNNLGKLAAKTLLEAFAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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