Pseudomonas aeruginosa CF_PA39, AX20_RS0102330
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa CF_PA39 scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGACCCAGAGCCGCGCGGTGACCAAGCGGGTGCTGGTGGTGGACGATTCGTCGGTGGCGCGCAAGCAGGTGATCCGTTGCCTGGAGGCGGTCGGCGTG GAAATGACCGCGCTCAACGACGGGCGCCAGGCCCTGGAGTACCTGCAAAACATGCTCGCCGAGGGACGGCGTCCGGAAGACGAGCTGCTGATGCTGATCT CCGACATCGAAATGCCGGAAATGGACGGTTATACCCTGACGGCGGAAATCCGTAGCGATCCCCGCCTGCAGAAACTGCACATTCTCTTGCATACTTCATT GTCCGGGGTCTTCAACCAGGCGATGGTGAAGAAGGTCGGTGCGGACGACTTCCTCGCCAAGTTCCGTCCGGACGATCTGGCGGCACGGGTGGTGGAGCGG ATCAAGGCGGTGGACGAGGGCTGAGCGATCGGTCCTCGACAACAATGTGAATACGGGCGACCGGCTGCGTTCCGGCCGCCCAGGGCGAAGAGGCTTATGC
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| DNA Sequence for Gene |
>AX20_RS0102330
GTGTCGGCAGCTAATGCGGATTTCGAGTTGTTCAGGGTCTTCCTCGAGAAGACCTGCGGCATTGTGCTGGGCAGCAACAAGCAGTACCTGGTCTCGAGCC GGCTGAACAAGCTGATGGAGCAACAGGGTATCAAGAGCCTGGGAGAGCTGGTGCAGCGCATCCAGACCCAGCGCGGCGGCCTGCGCGAGATGGTGGTGGA TGCGATGACCACCAACGAGACCCTGTGGTTTCGCGATACCTACCCGTTCGAGGTGCTCAAGCAGCGGGTTCTTCCCGAACTGATCAAGGCCAACGGCGGG CAGCGCCTGCGGATCTGGTCGGCGGCTTGTTCGTCCGGCCAGGAGCCGTACTCGCTGTCGATGGCCATCGACGAGTTCGAGAAGACCAATCTGGGGCAGT TGAAGGCGGGCGTGCAGATCGTCGCCACCGACCTGTCGGGGTCGATGCTCACCGCCGCCAAGGCCGGCGAATACGACACCCTGGCGATGGGCCGCGGGCT GTCGCCGGAACGTCTGCAACGCTATTTCGATGCCAAGGGGCCGGGGCGCTGGGCGGTCAAGCCGGCGATCCGCAGCCGCGTCGAGTTCCGCGCCCTGAAC CTGCTGGACAGCTACGCCAGCCTCGGCAAGTTCGACATGGTGTTCTGCCGCAACGTGCTGATCTACTTCTCCGCCGAGGTGAAGCGCGACATCCTGCTGC GCATCCATGGCACGCTCAAGCCCGGCGGCTACCTGTTCCTCGGCGCCTCCGAGGCGCTGAACAACCTGCCCGACCACTACCAGATGGTGCAGTGCAGCCC GGGCATCATCTACCGGGCCAAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGAAAGGAAGCGGACCCGCGCCGGATTGCTCCGGGGGTGACCTGGCAGCCTGGCGCGGGTCCGCTTGGGACGGGCAGGTGGGACGAGGCTTTCGCCCACT GCCCAGGCTCCGAGCGCCACGCGCGGCGGCGCCGTCGCAGCCCGCTCGGCACAGGACGGCTGACTCGGAGCGGGGCAGTTTAGGACTGCGCGATCTAGTT GTATTGACAGATATTTCTGATAGTCAGGTGATCTGGCAAGTTGCCGCTTTGCCGGGGAACTGCTTACATGACTCAGGCGTTCCCCCGATCCGCCATGCCT ACCAGGAGACTTCCATGGCCATCACTGCGCTGCCCTCGGCTGATGGGCAAGAGTTGACCATCCAGATCCAGGGGCGCTTCGATTTCGGGGCCCATCAGGA TTTCCGCGATGCCTACGAGCGGGTCGCGATCACTCCGCGACGCTATGTCGTCGACCTGCGCAACGCCACCTACCTGGACAGCTCGGCCCTCGGCATGCTC
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| Amino Acid Sequence |
>chemotaxis protein CheR
MSAANADFELFRVFLEKTCGIVLGSNKQYLVSSRLNKLMEQQGIKSLGELVQRIQTQRGGLREMVVDAMTTNETLWFRDTYPFEVLKQRVLPELIKANGG QRLRIWSAACSSGQEPYSLSMAIDEFEKTNLGQLKAGVQIVATDLSGSMLTAAKAGEYDTLAMGRGLSPERLQRYFDAKGPGRWAVKPAIRSRVEFRALN LLDSYASLGKFDMVFCRNVLIYFSAEVKRDILLRIHGTLKPGGYLFLGASEALNNLPDHYQMVQCSPGIIYRAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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