Pseudomonas chlororaphis HT66, M217_RS0126135

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis HT66 contig000041, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GTGCGCCTCAACGAGCACGATTGCCGGGTGTCGGTGGTCAGCGGCTCGGTGCAGTTGCAACCCCTGTTCGGGCCGCAACTGGAGTTGCGCGAAGGCCAGC GGGTCCGGCTGCGGGCGGAGGGCGCCGGGCAGATCGACGCCTTCGACGCGCAACTGCCAGGCTGGCGCGACGGCGTGCTGATGGCGCAGAACCAGCCGCT GGGGGACTTCCTGCGCGAGCTGAGCCGTTATCGTCCGGGCCTGCTGCGCTGGGAACCGGAACTGGAAGCCCTGCGCGTCACCGGCAGCTTCCGTCTCGAC AACACCGACCGCGTGCTGTCGCTGCTGGCCGCCAGCCTGCCGCTGCAAGTGCATTCGCGTACCCGCTACTGGGTGACTCTGATCCCGCAGAAAAACCAGC CGAAAAACACCCCGCCAAAAAATATTGGCTGAAGCCTGTCCCTTTTTTTCGCCTCGCCGGTCATTCCAGGTAAGTGAACAAAAAACGAGAGCTTCCTCCC
DNA Sequence for Gene
>M217_RS0126135
ATGCCCGCAGTATTGCCTTTCCGTTTGCGCCCGGTTTCGCCGGGCCTGCGTCCGTTGTTGCATTTGGGCCTCATGCTGACCCTGAGTTCCAGTCCGTTGC TTATCCAGGCCAGCTGGGCGGCCGATGCCGCGCGGCGCAGCTATCAGGTGCCGGCCGGCCCGCTGAGCGCCGCGCTGACCCGTTTCGCCGGCCTGGCAGG GGTCAACCTGTCGGTGGACCCGCAACTGGTCAGCGGTCGCAACAGCAGTGGCCTGTCCGGCGAGTATGGGGTGGAAGAGGGCTTTGCCCGTTTGCTGCAG GGTTCCGGCCTGCAACTGCAACCGGTGGGCGAACAGGCTTATATCCTGACCCTGGCGCCGCAAGGCAGCAGCCTGCAACTGGCGCCGACCTCGATTCTCG GCGCCAGCGGCGCGACCGACAGCGACGTCTTCGCCGGCGGCCAGGTGGCGCGCCGTGGTTCCCAGGGCCTGCTGGGCTCGAAGGACTTCATGGAAACGCC GTTCAGCATGACCACCTACACCAGCGAGGTGGTGAAGAACCAGCAGGCGCGGACCCTCGGCGACCTGATCGCCAGCGACCCTTCGGTGCGCGCCACCAAC CCGGCGGGCGGGCGCTATGAGCAGTTCACCATCCGCGGCTTCAGCCTGTTCAACAGCGATGTCGCCTACAACGGCCTGTACGGCGTGCTGCCGACCTACA CCATCGACATGGAAATGGCCGACCGGGTGGACATCCTCAAGGGCCCGACCCAGCTGATCAACGGCATCTCGCCGCGGGGCAGCGTCGGCGGCGGGATCAA CGTGGTGCCCAAGCGCGCCACCGACAAGCCGATCACCGAACTCACCGGCAGCTACGCCTCCGACAGCCAGGTCGGCGGCGCGGTGGACGTCGGCCGGCGC TTCGGCGAGGACAACAAGTTCGGTGTGCGCCTGAACGCGGTCAAGCAGTCCGGCGACACCAAGTGGGATCACCAGAGCGTCGACCGCGAGATGGCGGTGC TGGGCCTGGATTTCCGTGGCGAGCGCCTGCGCCTGTCGACGGACATCGGCCACACCGAGCGCGATACCGACGCGCCCCAGGAGCGGGTGCAGATCGGCGC CAACGCCAAGGTGCCGGACGCCGACGATGTGCGGCACAACTATGCGCAGTCCTGGAGCAAGGCACGGACCAAGGACACCTTCGGCACGGTGAATGCCGAA TACGACGTCAATGATTCGATCATGCTGTATGGCGGCGTCGGCGCGCGCAAAAGCAACCACGATTTCCTGCGCCATGCGGTGTCGATCACCAACGACGCCG GCGACTTCAGCGTCCAGCCCCGCGACTTCACCCGCGACGAAAACGTGCGCACCACCACGGCGGGCGTGCGCAGCTGGTTCCACACCGGCCCGGTGAGCCA TGAGGTCAACCTGGCGGCCAGCTACTTCTACATGGATTTCGAAAACGGCGGCGCGCGTTATGCCGCGTCCCCGAGCAACCTCTACAACCCGCGGCCGACG CCGACCCCGTCGCGGCCGACGCGTTTGGACCCCAAGGTCTACACCGAGAACCGCTTCAGCGGCGTGGCGCTGTCCGACACCCTGGGCTTCTTCGATGACC GCCTGCTGCTGACCCTCGGCGCGCGCTGGCAGCGGGTCAAGGTCGACGACTGGAGCGACGGCGTCAAAGGCGACACCGCCTACGACGAGGAAAAGGTCTC GCCTTCGGGTGGCCTGCTGTTCAAGGCCACCGATCAGTTGTCGCTGTACGTCAACTACATGGAAGGCCTGAGCCAGGGCAAGATCGCGCCGTCGACCTCG ATCAACGAAGACGAAATCTTCCCACCGTTCATCAGCCGCCAGGTCGAGGCCGGCGCCAAGTACGACGCCGGGGCGTTCGCCCTGACTGCCGCGGTGTTCC GCATCAAGCAGCCGGCCTACGAGACCAACGCCACCACCCGGGTCTTCGGCCCGAACGGCAAGCGCCAGAACGACGGCGTCGAGTTGAGCGTGTTCGGCGA GCCGCTCAAGGGCTTCCGCCTGCTGGGCGGGGTGATGTACATCGACAGCGAACTGAAGGACACCACCAATGGCACCTTCGACGGCAATCGCGCGCCGGCC ACGCCGAAGTACAACGTCAACCTGGGTGCCGAATGGGATGTGCCGAAGGTCCAGGGCCTGACCCTGACCGCGCGCGGCATCTATTCCAGCTCGCAGTACC TGGACCAGGCCAACAGCAAGGAAATCGACTCCTGGGAGCGTTTCGACCTGGGTGCGCGCTACGCATTCAAGCTCGACGACAAGGACATCACCTTGCGCGC CAATGTCGAGAACGTGCTGGACAAGCGTTACTGGAGTTCGGCCGGGGCCTCGGACGACAGCGAGCCGGGGTTGACCCTGGCGACGCCGCGGACCCTGTTG CTCTCGGCAACCCTGGGTTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GAAAACGATGCGAAGCGCCACAGGGAAGGGCGCGCCGCTTTGTTGATCGACCATGACCGGTTCCCGGTCGAGGAAGGATGTATGCCCGTTATTACATGAT GAACTTGCCCGCCTCTTGAATGAGGTATTGGCCATTTAATGGCAACTAACAAAGTTGTCAGAAAGATGGCAATAACATGGCGAACTCATGGCGTCATTAA TGACTTTTTCCAGGTTTATCAACTTGGCTATTGGCGTGCGCTCGATAGTTAACTTATATCCGAAAGCGGTATGTAAATATTCCAAATAAGTTCGAATAAG CAGTTGCGCCTTTTTATTAATGATAATAATTTGCATGTCGAATTTAACGAGGGTGAACAGATGTTGAATGATGGCATATTGCGCACTAGTCCTCTGCAAA AGAGCAATGCCGACTATCTGGCCAGACAAGGCAAGTTCGAATCCAATGTGCGCAGTTATCCGCGCAAGTTGCCACTGGCCATCGCCAAGGCGCATGGGGT
Amino Acid Sequence
>TonB-dependent receptor
MPAVLPFRLRPVSPGLRPLLHLGLMLTLSSSPLLIQASWAADAARRSYQVPAGPLSAALTRFAGLAGVNLSVDPQLVSGRNSSGLSGEYGVEEGFARLLQ GSGLQLQPVGEQAYILTLAPQGSSLQLAPTSILGASGATDSDVFAGGQVARRGSQGLLGSKDFMETPFSMTTYTSEVVKNQQARTLGDLIASDPSVRATN PAGGRYEQFTIRGFSLFNSDVAYNGLYGVLPTYTIDMEMADRVDILKGPTQLINGISPRGSVGGGINVVPKRATDKPITELTGSYASDSQVGGAVDVGRR FGEDNKFGVRLNAVKQSGDTKWDHQSVDREMAVLGLDFRGERLRLSTDIGHTERDTDAPQERVQIGANAKVPDADDVRHNYAQSWSKARTKDTFGTVNAE YDVNDSIMLYGGVGARKSNHDFLRHAVSITNDAGDFSVQPRDFTRDENVRTTTAGVRSWFHTGPVSHEVNLAASYFYMDFENGGARYAASPSNLYNPRPT PTPSRPTRLDPKVYTENRFSGVALSDTLGFFDDRLLLTLGARWQRVKVDDWSDGVKGDTAYDEEKVSPSGGLLFKATDQLSLYVNYMEGLSQGKIAPSTS INEDEIFPPFISRQVEAGAKYDAGAFALTAAVFRIKQPAYETNATTRVFGPNGKRQNDGVELSVFGEPLKGFRLLGGVMYIDSELKDTTNGTFDGNRAPA TPKYNVNLGAEWDVPKVQGLTLTARGIYSSSQYLDQANSKEIDSWERFDLGARYAFKLDDKDITLRANVENVLDKRYWSSAGASDDSEPGLTLATPRTLL LSATLGF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site