Pseudomonas chlororaphis HT66, M217_RS0125545
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis HT66 contig000041, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTTCCTGGTACTGGCGGCGCAATACGAGAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTGCCCATGACCCTGCTGTCGGCCATCACCGGGGTGA TCCTGTCCGGTGGCGACAACAACATCTTTACCCAGATCGGCCTGATCGTACTGGTGGGCCTGGCGTGTAAGAACGCGATTCTGATCGTCGAGTTCGCCAA GGACAAACAGGAAGAAGGCCTCGACCCGCTGGCCGCGGTGCTCGAAGCCTGCCGCCTGCGTCTGCGGCCGATCCTGATGACCTCGTTCGCCTTCATCATG GGTGTGGTACCCCTGGTGTTCTCCAGCGGCGCGGGTGCGGAAATGCGTCATGCCATGGGTGTCGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCG GCCTGCTGCTGACCCCGGTGTTCTACGTCCTGATCCGCAACTATGTGGAGCGCAGCGAAGCCCGCAAAGCGACCCGAGCCCTGAAACTGGAGGCGCAACA
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| DNA Sequence for Gene |
>M217_RS0125545
ATGAGTTTGAAAGTCTTCCTGCCGAGCTTGCTGGTACTGGCCCTGAGTGCCTGTGCCGTCGGCCCGGACTACCAGACCCCGACTACCGAGGCGGCCAACA TCACGGCCGCCACCGACGGCGCCGCGGGCCAGAAGAATTTCGACCGCGCGCGTTTCGAAGGCATCTGGTGGCAGCAGTTCGACGACCCGGTGCTCAACCA GCTGGTGACCCAGTCCCTGCAGGGCAACCGTGAGTTGCGCGTGGCCTTCGCCCGCCTGCGGGCCGCCCGGGCGATTCGCGACGACGCCAGCAACGATGCG ATGCCGACCATCACCAGCCGCGCCAGCAGTGACCTGGCCAAGGGTCAGATCCCCGGCCAGACCACCAGCCGGGTCAACAGCGAACGCTACGACCTGGGCC TGGACATGGCCTGGGAACTGGACCTGTTCGGCCGCATCCAGCGCAACCTGGAGGCCAGCGAAGCCGACCAGCAGGCCGCCGAGGCCGACCTCTACCAGCT GCAAGTCACCATGATTGCCGAGCTGGTGGATGCCTACGGCCAACTGCGCGGCGCCCAGCTGCGGGAGAAGATCGCCCTGGCCAACCTGAGCAACCAGCAG GAGTCGCGCAAGATCACCGAAAGCCTGCGCGACGCCGGCGTCGGCGACCAGCTCGACGTGGTCCGCGCCGATGCGCGCCTGGCCGCGGTAGAAGCCAGCG TGCCGCAACTGCAGGCCGAACAGGTGCGCCAGCGCAACCGTATCGCCACCCTACTGGGCGAGCGTCCGGACAAGCTCAGCGTCGACCTCAAGCCCGCGCA GTTGCCGGCGATTGCCAAGGCCTTGCCGATCGGCGACCCGGGCGAACTGCTGCAACGCCGTCCGGACATTCTCAGCGCCGAACGCCAGCTGGCCGCCGCC ACCGCACGGATCGGCGTGGCCAAGGCCGACCTGTTCCCCCGGGTCAGCCTCAGTGGTTTCCTCGGCTTCACCGCCGGCCGTGGTTCGCAGATCGGTTCCT CGGCCGCCAATGCCTGGGCCCTGGGCCCGAGCATCACCTGGGCGGCCTTCGACCTGGGTAGCGTGCGCGCCCGCCTGCGCGGCGCCAATGCCGACGCCGA TGGCGCCCTGGCGACCTACGAGCAGCAAGTGCTGCTGGCCCTGGAAGAGTCGGAAAACGCTTTCAGCGATTACGGCAAGCGCCAGCAACGCCTGATCTCG CTGATTCGCCAGAGCGAGTCGAGCCGCGCCGCGGCGGACCTGGCGGAAATCCGCTACCGCGAAGGCACCGTCGACTTCCTGGTGCTGCTCGACGCCCAGC GCGAACGCCTGGCCGCCGAGGACTCCCAGGCCCAGGCCGAGGTCGACCTGTACCGCGGCATCGTCGCCATCTACAAGGCCCTGGGTGGCGGCTGGCAGCC AGAGACGGTCGCCAGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTTCAACCGAGCTCCTTTGGTTGGCCGCAACCAACCATATTTTTGCCCCGTGTTCTCATTCGGTCGCGGGGCTTTTTTTTGCCTGGTAAAAAGCATCG CGGGCAAGTCGGATCGCCGCCCGCTCGCTCCTACAGATCAATGCGGTCCCGTAGGAGCGAGGCTTGCCCGCGATAGCGATCGTTCAGACACCCTAACCCT GTGCCTATTCCAACACCGTCACCGTCGCCGTGGTGCCGGCGCGCAATTTGTCCTTGCCCGGGTAATCGGGGTCGATGGCGATTCGCACCGGCACCCGCTG CGCCAGCTTGACCCAGGTATAGCTGGGGTTGATGTTGGCCAGCAGGCGGCTGCCCTGGGAGTTCTCGCGGTCAGTAATGGCGAAGGCGATGCTCTGCACC TTGCCGCCGAAGGTCTCGCCGCTCATCAACTGGATGCGTACCGCACTGCCCTCCTCGATCCGCGGCAGCTTGGTTTCCTCGAAGTAGCCGCTGACATAAA
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| Amino Acid Sequence |
>RND transporter
MSLKVFLPSLLVLALSACAVGPDYQTPTTEAANITAATDGAAGQKNFDRARFEGIWWQQFDDPVLNQLVTQSLQGNRELRVAFARLRAARAIRDDASNDA MPTITSRASSDLAKGQIPGQTTSRVNSERYDLGLDMAWELDLFGRIQRNLEASEADQQAAEADLYQLQVTMIAELVDAYGQLRGAQLREKIALANLSNQQ ESRKITESLRDAGVGDQLDVVRADARLAAVEASVPQLQAEQVRQRNRIATLLGERPDKLSVDLKPAQLPAIAKALPIGDPGELLQRRPDILSAERQLAAA TARIGVAKADLFPRVSLSGFLGFTAGRGSQIGSSAANAWALGPSITWAAFDLGSVRARLRGANADADGALATYEQQVLLALEESENAFSDYGKRQQRLIS LIRQSESSRAAADLAEIRYREGTVDFLVLLDAQRERLAAEDSQAQAEVDLYRGIVAIYKALGGGWQPETVASK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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