Pseudomonas chlororaphis HT66, M217_RS0125135
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis HT66 contig000041, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGTTCAATGTCGATTATCTGAAGATCGACCAGAGTTTCGTGGCCATGATCGGTGTCGACGCCCTGTCCCGCCACATACTCGACAGCATCATCGAACTCT CGGGCAAACTCGAACTGGGAATAGTCGCCGAGGGCGTGGAAACAGCGGAACAACAGGACTATCTGGCCGCCCATGGCGTCGACTTCCTGCAGGGCTACTT ATTCGGCAGACCGATGCCCGGAGAAGAGTTCCTACAAGCACTGGCGCGCCACTAAATAGCCATTTTTAATGAAAATTTATTGAACTCGGCAATTGTTTAG CGCACCAATTCGAATCAGAAGATGACAAATTGTGTGCATCAACAACGACGTGATTTACTTGCGCCAGATTAACTACTACAATTTTTCATGCCTGTACAAG ATTCACAGGTGGGCCATTATAATCGAGTCGTTCTAAGGCTCTTGGCTTATAGCTTTGTTTGCGGTTGGTATCAGCCAAATACACTATTGGAGTAAAGATA
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| DNA Sequence for Gene |
>M217_RS0125135
TTGTCCAGACTCGCTGAATTTCGTGCAGCAGAAAAGGCCCTTCAAGAACAGCTCGCCCAGCTGGAATCCCTGAAGAACGACGCCGGACTCAAGAAAGAAA TCGAGTTCGAGGAAAAGCTCCAGGGCCTGATGAAGACCTACGGCAAAAGCCTGCGCGACATTATCGCCATTCTCGATCCTCATCCGGGCAAATCCGCTCT GCCGCTCTCGGGCGCACCGAAAACCCGTCGTGCCCGCGTGGTCAAGGTTTATCAGAACCCGCACACCGGCGAGCTGATCGAAACCAAGGGCGGCAACCAT CGTGGTCTTAAAGCCTGGAAAGAACAGTACGGCGCCGCCACTGTAGATTCCTGGCTGCGCGGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAAACCGATGTATATAAAAGACCCTGCCCATGCAGGGTCTTTACCTTTAAGCCAAGGCTGTTTGTTTCAAAATCGAATAAGTTGCAGCCCATAGATTGCC TGAGCGGCAATAAACACCCAGCCGGAATGCACCTGCGTAGCAATCCCCCCGCTTGATCCTACAACTTTGTACTTAGTTCAAAGGCGCGAACCACGCCGAT CGACGTAGGACAATCGCCCCCCTCCACTAAAGTTTCAGGCTACTTCGCACCTCGCGGATCTCCTCCTGACTTTCGGCATAAACCGCAGCCTGTCCGGCAT AAGACAATACATAGGCCTTATCGCCATCGACAGCAGCCACCAGTGTTTGCGACAACACATGACGGCCGTTCTCGGTAATGGTGCAAGTGGTTTCCAGCGC CGCCAGACGACTCAATGTCGTATCGTGAATGCGCGTGCACACACTTTGATAACCACCGCGCCCGAAGTCCTTCTGCACCGACTTGCGCATCTCCAGCAAG
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| Amino Acid Sequence |
>transcriptional regulator
MSRLAEFRAAEKALQEQLAQLESLKNDAGLKKEIEFEEKLQGLMKTYGKSLRDIIAILDPHPGKSALPLSGAPKTRRARVVKVYQNPHTGELIETKGGNH RGLKAWKEQYGAATVDSWLRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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