Pseudomonas chlororaphis HT66, M217_RS0117470
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis HT66 contig000028, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTGGGCTGATATAGCACTTCCCAAAACCGCTGCAAGGGCTTTACATTGGCACTTGTAGCGCGTCGGAAAGCTTGGTTAAAAAATCAGCGCTTCCCTAA TCGCTGGTGATTTTTTAAACTGTTGAGTCCGCTCGCCCATCCGGGCAGCGCGCATATTGCATTTGCTACGAGGAAGACCATGGCCCGCGTAACCGTTGAA GACTGTCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCAACCGGCGGCAAAGAGCCGAAAGTAGCAT GGGAAAACGACAAGCCTACCGTTGTCGCCCTGCGCGAAATCGCTGAAGGCCTGATCGACTACGCAGCTATCGCCGAAGCCGAAATCGTTGAAGATGAACC GCTTTTTGCTGCTTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGATCACAGCTTACGGCAGGAGTCATC
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| DNA Sequence for Gene |
>M217_RS0117470
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTATCTCGGCACGGACCAGGTCAATCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ATGACGGTCAGCGCCGTCGCAGCGGCGAGGCGTACGTCACGCACCCATTAGCGGTCGCAAATATTCTCGCCGACATGCATATGGACCATCAGAGCCTGAT GGCAGCCATGCTGCATGACGTGATCGAAGACACCGGTATCGCCAAAGAAGCGCTTTGCGCGCAGTTCGGTGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAGGCCGAAGCCCAAGCGGAAAACTTCCAGAAAATGGCCATGGCCATGGCGCGCGACATCCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCCGGCGAAAAACGCCGGCGGATCGCCAAGGAAACCCTGGAGATCTACGC GCCCATCGCCAACCGCCTGGGCATGCACAGCATTCGCATCGAATTCGAAGACCTCGGGTTCAAGGCCATGCACCCGATGCGTTCCGCGCGGATCTACCAG GCGGTCAAGCGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAATCCTTGAGCCACTGCCTGGCCATCGACGGCATCCAGGGCGAAGTCA GCGGCCGCCAGAAGCACTTGTACGGCATCTACAAAAAGATGCGCGGCAAACGCCGGGCCTTCAACGAGATCATGGACGTCTACGCGTTCCGGATCATCGT CGACAAGGTCGACACCTGCTACCGCGTGCTCGGCGCCGTACACAATCTGTACAAGCCGCTGCCGGGTCGCTTCAAGGATTACATCGCGATTCCCAAGGCC AACGGCTACCAGTCGCTGCATACGACGCTGTTCGGCATGCACGGCGTTCCGATCGAAATCCAGATCCGCACCCGCGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCCCACTGGCTGTACAAATCCAGCGGTGACGAGCAGCCAAAGGGCACTCACGCCCGGGCTCGTCAGTGGGTCAAGGGCGTGCTGGAGATGCA GCAACGCGCCGGCAACTCCCTGGAATTCATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCGAAGGGCCGGATCATGGAG CTGCCCAAAGGCTCCACGGCGGTGGACTTCGCCTATGCGGTGCACACCGACGTCGGCAACAGCTGCATCGCCTGTCGTATCAATCGCCGCCTGGCGCCGC TGTCCGAACCGCTGCAAAGCGGCTCCACCGTGGAAATCGTCAGCGCCCCGGGCGCGCGCCCCAACCCGGCCTGGCTCAACTTCGTGGTCACCGGCAAGGC TCGCACCCACATCCGCCACGCCCTGAAACTGCAACGCCGCTCCGAGTCCATCAGCCTGGGCGAACGCCTGCTGAACAAGGTGCTCAATGGTTTCGACAGC GCACTGGAAAAGATCCCCGCCGAACGCGTGCAAGCGATGCTCACCGAGTATCGCCTGGAGCTGATCGAAGACCTGCTGGAAGACATCGGCCTGGGCAATC GCATGGCTTATGTGGTCGCCCGCCGCCTGCTCGGCGAAGGCGAACAGCTGCCAAGCCCGGAAGGCCCGCTGGCCATTCGCGGCACCGAAGGCCTGGTCCT GAGCTACGCCAAGTGCTGCACGCCGATCCCGGGCGACCCGATTGTCGGCCACCTGTCCGCGGGCAAAGGGATGGTGGTGCACCTGGACAACTGCCGCAAT ATCAGCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTTTCGTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAGCTGCGCGTCGAGCTGGAAC ACCAGCGTGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCGGCCGACGGCAATATCGAGAAAATCAGCATGGACGAACGGGATGGTCGCATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCCTGACCGGGGTCATCCGCATCACTCGCATGCGT GCATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCGCTATATAGCCCGCCCATTACAAGGAGTCATTCATGACCAAGACCGTTATCACCAGCGACAAGGCACCCGCCGCGATCGGCACCTACTCCCAGGCGA TCAAGGCAGGCAACACCGTCTACATGTCCGGCCAGATCCCGCTCGACCCAAAGACCATGGAACTGGTGGAAGGCTTCGAAGCCCAGACCGTCCAGGTCTT CGAGAACCTCAAGTCCGTGGCCGAGGCCGCCGGTGGTTCGTTCAAGGACATCGTCAAGCTCAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTC AACGAGATCATGGGCAAGTACTTCCAGCAGCCTTACCCTGCCCGCGCCGCTATCGGCGTTGCCGCCCTGCCAAAAGGCGCGCAGGTTGAAATGGATGCCA TCCTGGTCATCGAGTAACACGTCCGGCGCGGCTACCCAGGCCGCGCCGTCTTCGTTCTGAAAGGATTTCCTCATGCGCAAAGCGCTAGCCCTCTCGTTGT
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDALADRLSTYLGTDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALCAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHSIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAIDGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS ALEKIPAERVQAMLTEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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