Pseudomonas chlororaphis HT66, M217_RS0116540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis HT66 contig000028, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCAAGCCGGTGGCATCGAGTGCTACCCGGTGACCGGCGAGATCACCTACGGCCTGGAGCGCCTGGCCATGTACCTGCAGGGCGTGGATTCGGTCTACG ACCTGGTCTGGGCCGACGGCCCGTTCGGCAAGGTGACCTACGGCGACGTGTTCCACCAGAACGAAGTGGAGCAGTCGACCTACAACTTCGAACACGCCAA CGTCGAGAAGCTGTTCGAACTGTTCGATTTCTACGAAAGCGAAGCCAAGCGCCTGATCGAGCTGGACCAGCCGCTGCCGCTGCCGAGCTATGAAATGGTC CTCAAGGCCTCGCACACCTTCAACCTGCTGGATGCCCGTCGCGCGATCTCCGTGACGGCGCGTCAGCAGTACATCCTGCGTGTGCGCACCCTGGCGCGTT CCGTTGCGCAAGCCTACCTGCTGGCCCGCGCCAAGCTGGGCTTCCCGATGGCGACCCCGGACCTGCGTGATGAAGTGTTGGCTAAGTTGGAGGCGGCACA
|
|
| DNA Sequence for Gene |
>M217_RS0116540
ATGAGTGCGCAAGATTTTCTGGTTGAACTGGGCACTGAAGAACTGCCACCCAAAGCCCTGAACACCCTGGCCGAAGCCTTCCTGGGCGGTATCGAAAAAG GCCTGCAGGCCGCCGGCCTGAACTTCGAGGCCAAGCATGTCTATGCCGCGCCGCGCCGTCTGGCGGTGCTGATCAGTGGCCTGGCCACCCAGCAGCCGGA CCGCAGCATCAACCTCGACGGTCCGCCGCGTCAGGCCGCCTTCGACGCCGAAGGCAACCCGACCCAGGCCGCCCTGGGCTTCGCCAAGAAATGTGGTGTG GACCTGAGCGAAATCGACCAGAGCGGGCCGAAGCTGCGCTACAGCCAGAGCATCAAGGGCAAGCCGACCACCAGCCTGCTGCCGACCATCGTCGAAGACT CGCTGAACGACCTGCCGATTCCGAAACGCATGCGTTGGGCCGCGCGCAAGGAAGAGTTCGTGCGTCCGACCCAATGGCTGGTGATGCTGCTCGGTGACCA AGTCATCGACTGCACCATCCTCGCCCAGAAAGCCGGTCGCGACTCCCGTGGTCACCGCTTCCATCATCCGGAAAGCGTGCGCATCACCTCGCCGGCCAAC TATCTGGACGACCTGCGTGCCGCCTATGTGCTGGCCGACGCCAACGAGCGTCGCGAGCTGATCAGCAAGCGCACCGAAGAACTGGCGCGCCTGCAGGAAG GTACTGCCATCGTTCCAGCCGATCTGCTGGACGAAGTGACCGCCCTGGTGGAATGGCCGGTGCCGCTGGTGTGCTCGTTCGAGGAGCGTTTCCTCGAAGT GCCGCAGGAAGCCCTGATCACCACCATGCAGGACAACCAGAAGTACTTCTGCCTGCTGGACGTCGACGGCAAGCTGCTGCCGCGTTTCATCACCGTGGCC AACATCGAAAGCAAGGACCCGCGCCAGATCATCGAGGGCAACGAGAAAGTCGTTCGCCCACGCCTGACCGACGCCGAGTTCTTCTTCAAGCAGGACAAGA AACAGAAGCTCGAAGACTTCAACCTGCGCCTGCAGAACGTGGTGTTCCAGGAGAAGCTGGGCAGCGTCTACGACAAGGCCGAGCGCGTCTCGAAACTGGC CGCGTTCATCGCCCCGCGCATCGGCGGCGACGCCCAGCGTGCCGCGCGCGCGGGCCTGCTGTCGAAGTGCGACCTGGCCACCGAAATGGTCGGCGAGTTC CCGGAAATGCAAGGTATCGCCGGTTACTACTACGCCCTCAATGACGGCGAGCCGGAAGACGTCGCCCTGGCGCTGAACGAGCAGTACATGCCGCGTGGCG CCGGCGCCGAGCTGCCAAGCACCGTCACCGGTGCCGCCGTGGCCATTGCCGACAAGCTCGACACTCTGGTCGGCATCTTCGGCATCGGCATGCTGCCAAC CGGCAGCAAGGACCCGTACGCGCTGCGTCGTGCCGCGCTGGGCGTGCTGCGTATCCTGATCGACAAGAAGCTCGACCTGGACCTGACCGAAGCCGTGGCG TTCGCCGTCAGCGCGTTCGGCAGTAAGGTCAAGAGCGCCGGCCTGGCCGATCAGGTCCTGGAGTTCATCTTCGACCGTCTGCGTGCCCGTTACGAAGACG AAGGCGTGGATGTCGCCACCTACCTGTCGGTCCGTGCCCTGAAGCCGGGTTCGGCCCTGGACTTCGACCAGCGCGTGCAGGCCGTGCAGGCCTTCCGCAA GCTGCCGGAAGCCGCCGCGCTGGCCGCGGTGAACAAGCGCGTCTCGAACCTGCTGAGCAAGGTCGAAGGCAGCGTGCCGACAACAGTGGAAGCCAAGTAC TTCGACAACGCCAACGAGTTCTCCCTGTACTCGGCGATCCAGCAAGCGGACCAGGCCGTGCAGCCAATGGCCGCGGCGCGTCAGTACAGCGAGACCCTGG CCCGCCTGGCCGCCCTGCGCGAGCCGGTCGACGCCTTCTTCGAGAAGGTGATGGTCAACGCCGAAGACGCCAACGTGCGGGCCAACCGCTACGCGCTGCT GGCACGTCTGCGGGGTCTGTTCCTCGGTGTCGCCGACATCTCGTTGCTGGGGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCGTACGTGAAACTGCTGATTCTCGATCGGGACGGAGTGATCAATCACGACTCCGACGCTTACATCAAATCGGTGGAGGAGTGGATTCCGCTCCCCGGC TCGGTCGAGGCCATCGCGCAGTTGAGCAAGGCCGGCTGGACGGTAGCGGTCGCTACCAACCAGTCGGGCATCGCTCGCGGTTACTACGATGTCGCCACCC TCGACGCCATGCACGAGCGCCTGCGCTCTCTGGTGGCCGAGCAGGGCGGCGAACTCGGCCTCATCGTTTACTGCCCCCATGGCCCGGACGAAGGCTGCGC CTGCCGCAAACCCAAGCCCGGCATGTTGCAGACCATTGCCCGGCACTACGAAGTGGATCTGGCTGGTCTATGGTTTGTGGGCGACAGTCTCGGTGACCTG GAAGCCGCAAAAGCCGTCGACTCTCAGCCAGTTTTGGTAAAGACCGGGAAAGGCGAAAAGACCCTGGGGAAACCCCTACCGGTAGGCACCTTGATTTTTG
|
|
| Amino Acid Sequence |
>glycine-tRNA synthetase subunit beta
MSAQDFLVELGTEELPPKALNTLAEAFLGGIEKGLQAAGLNFEAKHVYAAPRRLAVLISGLATQQPDRSINLDGPPRQAAFDAEGNPTQAALGFAKKCGV DLSEIDQSGPKLRYSQSIKGKPTTSLLPTIVEDSLNDLPIPKRMRWAARKEEFVRPTQWLVMLLGDQVIDCTILAQKAGRDSRGHRFHHPESVRITSPAN YLDDLRAAYVLADANERRELISKRTEELARLQEGTAIVPADLLDEVTALVEWPVPLVCSFEERFLEVPQEALITTMQDNQKYFCLLDVDGKLLPRFITVA NIESKDPRQIIEGNEKVVRPRLTDAEFFFKQDKKQKLEDFNLRLQNVVFQEKLGSVYDKAERVSKLAAFIAPRIGGDAQRAARAGLLSKCDLATEMVGEF PEMQGIAGYYYALNDGEPEDVALALNEQYMPRGAGAELPSTVTGAAVAIADKLDTLVGIFGIGMLPTGSKDPYALRRAALGVLRILIDKKLDLDLTEAVA FAVSAFGSKVKSAGLADQVLEFIFDRLRARYEDEGVDVATYLSVRALKPGSALDFDQRVQAVQAFRKLPEAAALAAVNKRVSNLLSKVEGSVPTTVEAKY FDNANEFSLYSAIQQADQAVQPMAAARQYSETLARLAALREPVDAFFEKVMVNAEDANVRANRYALLARLRGLFLGVADISLLG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|