Pseudomonas chlororaphis HT66, M217_RS0116520
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis HT66 contig000028, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCAAGCAGCGGGTCCAGCTGGGCAACCGTGTGGCGGCCTCGACCAAGGAAGGCATCCTCAGCGTCATCAAGGAAGTGCGCAAAGGTGGTGCGGTGGGC ATTCCCGCCGACCCGGAACCGGCCGAATCCGCCGGAATCTTCGTGCCCTTCTTCGCCACCAAGGCGCTGACCAGCAAGTTCGTGCCGAACATGCTCGCCG GCGGCAAGGCGGTCGGGGTGTTCCTGCATGCGCTGCGCCTGCCCGACGGTTCGGGCTACAAGGTGATCCTCGAAGCCGCGCCGGATGCGATGTACAGCAC CGATACCGAAACCTCCTGCGCGGCGATGAGCCAGGTGGTCGAGCGCTATGTGCGGGCTTATCCGAGCCAGTACATGTGGAGCATGAAGCGTTTCAAGAAA CGTCCGGCCGGCGAAGAACGCTGGTACTGACCGCCTGGCACGATCTGTGGATAACCTTTCGCCCAAGGTTATCCACAAAGGCTGAAGCAGAGCACAGCAT
|
|
| DNA Sequence for Gene |
>M217_RS0116520
ATGCCCGATTCGCGCAAATCCCTGAGGATCAAGATCCAGCATGAAAGCTTCGGCGAATGCCTGGGCCAGACGCGCAACCTGTCCGCTAGCGGGGTCTACG TCCAGCACCCGGCATTGGCGGCGCTGCCCAAGGGCGCGGTGGTTTACGGCCAGGTGCAAGGCCTGCCGATGAGCGCCCCGCGGGTGAAGATGGAAGTGGT GCTGGTGGATGCCGAGGGGATCGGCCTGCGTTATCTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCCGTGTCTGTAGCCGCTGCCGAGTGTGCGAGGTTGCGTACGAGGACGCAGTCATCGCTAAACCTGCGCACCAGGATTGTCTGGCAGATTGCGGTTTAC GACCGCTTCGCGGTCGATCGCAGCCTCGCTCACTCGGCAGCGGCTACAGTCAGCCTTTGGTCTGGCGCTCGAGCTTCTTGAGAAACACCGTCATTTCCTT TTCCGCCTGCTTGTCGCCATGCCCGCGGGCTGCTTCCAGGCCCTGCTCCCAGGCCTGGCGCGCCGCCGGATAGTCCTCCAGGCCCTGATAGGCCTTGCCC AGCAGCTTCCACGCCGCCGAATACTTGGGGTCGAAACCGACGCAGCGTTGCAGGTGCTCGGCGGCCTTGGCGTACTCGTGCAGATCCAGATACCCCTTGC CCAGGCCGAAACGCAGCAGCGAGTTATCCATGCCCTTGGCGAGCATTTTTTCCAGGGATTCGAGCATAGGGCACCTCGAGATAAGGGGAGTCAGCGGGAT
|
|
| Amino Acid Sequence |
>pilus assembly protein PilZ
MPDSRKSLRIKIQHESFGECLGQTRNLSASGVYVQHPALAALPKGAVVYGQVQGLPMSAPRVKMEVVLVDAEGIGLRYL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|