Pseudomonas chlororaphis HT66, M217_RS0115865

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis HT66 contig000027, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCGGCGACAACGCCGCCAAGGTCAAGCTGACCCTGGAAGACGGCAGCCAGTACAAGCTCGACGGCAAGCTGGAGTTCTCCGAAGTGTCGGTCGACGAAAC CACCGGTTCCGTGACCCTGCGCGCGGTGTTCCCGAACCCGGAACACACCCTGCTGCCAGGCATGTTCGTGCACGCGCAACTGCAGGCCGGCGTGAATGCC GCGGCGATCCTCGCCCCGCAACAAGGCGTGACCCGCGACCTCAAGGGCACACCGACCGCGCTGGTGGTTGGCCCGGACAACAAGGTTGAACTGCGTCAGC TCAAGGCCAGCCGCACCGTCGGCAACCAGTGGCTGATCGAGGACGGTCTGAAGGCCGGTGATCGCCTGATCACCGAAGGGCTGCAATTCGTCCGACCTGG CGTCGAAGTCAAAGCCAGCGAAGCGACCAACGTTCCAGCAAAAAACCCGGCCACTGCACAGGCAACTGACAAGGCTGCAGGCGGCAAAGGGGAGTAAACC
DNA Sequence for Gene
>M217_RS0115865
ATGTCGAAATTTTTTATCGACCGTCCGATTTTCGCCTGGGTAATCGCCCTGGTGATCATGCTGGTCGGGGCTCTATCGATCCTCAAATTGCCGATCAACC AATACCCGAGCATCGCGCCACCAGCGATCGCCATCTCCGTGACCTACCCAGGCGCTTCCGCACAGACCGTGCAGGACACCGTGGTCCAGGTCATCGAGCA GCAGCTCAACGGTATCGACAACCTGCGTTATGTGTCCTCGGAAAGTAACTCCGACGGCAGCATGACCATTACCGCGACCTTCGAGCAGGGCACCAACTCG GATACCGCGCAGGTTCAGGTGCAGAACAAGCTGAACCTGGCCACCCCGCTGCTGCCGCAAGAAGTGCAGCAACAGGGTATCCGCGTGACCAAGGCGGTGA AGAACTTCCTGTTGGTGATCGGTGTGGTTTCCGAGGACGGCAGCATGTCCAAGGACGACCTCTCGAACTACATCGTGTCCAACATGCAGGACCCGATCTC GCGAACCGCGGGCGTGGGTGACTTCCAGGTGTTCGGTGCCCAGTACGCCATGCGTATCTGGCTCGACCCGGCCAAGCTGAACAACTTCAACCTGACTCCG GTCGACGTGAAAACCGCCGTGGCGGCGCAGAACGTCCAGGTGTCGTCCGGCCAGATCGGTGGTTTGCCAGCCCTGCCAGGCCAGCAACTGAACGCCACCA TCATCGGCAAGACCCGCCTGCAGACTGCCGAGCAGTTCAAGGCCATCCTGCTGAAGGTCAACGCGGACGGCTCGCAAGTGCGCCTGGGCGATGTCGCCGA TGTCGCCCTGGGTGGTGAAAACTACTCCGTCAGTGCCCAGTTCAACGGTGCCCCGGCTTCCGGCCTGGCCGTGAAACTGGCCAACGGCGCCAACGCCCTG GACACCGCCAAGGCCCTGCGCAAGACCATCAGCGACCTGGAGCCGTTCTTCCCGGAAGGGATGAAAGTGGTATTCCCGTACGACACCACCCCGGTGGTGA CCGAGTCGATCAAGGGTGTGGTCGAGACCCTGGTCGAAGCGATCGTGCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAACTTCCGCGCCACCGTCAT CACCACCATGACCGTTCCGGTGGTGTTGTTGGGTACCTTCGGCATCCTCGCGGCCGCCGGGTTCAGCATCAACACCCTGACCATGTTCGGCATGGTGCTG GCCATCGGCTTGCTGGTGGACGACGCCATCGTCGTGGTGGAAAACGTCGAGCGGGTGATGGCCGAGGAAGGCCTGTCGCCCAAGGAAGCAACCAAGAAGT CCATGGGCCAGATCCAGGGCGCCCTGGTCGGTATTGCCCTGGTACTGTCGGCGGTACTGCTGCCGATGGCGTTCTTCAGCGGCTCCACCGGTGTGATCTA CAAGCAGTTCTCGATCACCGTGGTCTCGGCCATGGCCCTGTCGGTACTGGTTGCCCTGATCTTCACCCCGGCCCTGTGCGCCACCATGCTCAAGGCCATT CCCCACGGCGAACACGCCGCACCGAAACGCGGCTTCTTCGGCTGGTTCAACCGTACCTTCGACCGCAGCGTCAAAAGCTACGAGCGTGGCGTGGGCAACA TCCTGCGGCACAAGGCGCCTTACCTGCTGGCCTACGCGCTGATCGTGGTCGGCATGATCTGGCTGTTCGCCCGTATCCCGACTGCGTTCCTTCCGGAAGA AGACCAGGGCGTACTGTTCGCCCAGGTACAGACCCCGGCCGGTTCCAGTTCCGAGCGGACCCAGGTGGTAGTCGATGAAATGCGCGCCTACCTGCTGGAC AAGGAAAAGGACACCGTGGCCTCGGTCTTCACCGTGAACGGCTTCAACTTCGCCGGTCGCGGCCAGAGTTCGGGCATGGCGTTCATCATGCTCAAGCCAT GGGACGAACGCTCTGCTGAAAACAATGTGTTCAACCTGGCGGCCCGCGCCCAGCAACACTTCTTCACCTTCCGCGATGCGATGGTGTTCGCCTTCGCTCC GCCGGCGGTACTGGAGCTGGGTAACGCCACCGGTTTCGACGTGTTCCTGCAGGACCGCGCCGGTATCGGCCACGAGAAACTGATGGAAGCGCGCAACCAG TTCCTCGGCATGGCGGCGCAGAGCAAGGTCCTGTCCCAGGTGCGTCCGAACGGCCTGAACGACGAGCCGCAGTACCAGCTGGAAATCGATGACGAGAAGG CCAGCGCCCTGGGCGTGACCATCTCCGACATCAACAACACCTTGTCGATTGCCCTGGGCAGTAGCTACGTCAACGACTTCATCGACCGCGGTCGGGTGAA GAAGGTGTACATCCAGGGTCAGCCTAACGCTCGCATGAGCCCCGAGGACCTGAAGAAGTGGTACGTGCGCAATAGCGCCGGGACCATGGTGCCGTTCGCC TCCTTCGCCAAGGGCACGTGGATCTACGGTTCGCCGAAACTGGCCCGTTACAACGGCGTGGAAGCGGTGGAAGTCCTGGGTGCCCCGGCGCCGGGCTACA GTACCGGTGAAGCCATGGCCGAAGTCGAAGCCATCGCCAAGAAGCTGCCGGCCGGTGTCGGTATCTCCTGGACCGGTCTGTCCTACGAGGAACGTCTGTC GGGCTCGCAAGCGCCTGCGCTGTACGCCTTGTCGCTGCTGATGGTGTTCCTGTGTCTGGCGGCGCTGTATGAAAGCTGGTCGATTCCGATCGCGGTCATG CTGGTGGTACCGCTGGGGATCATCGGTGCGCTGATGGCGACCAGCCTGCGCGGCCTGTCCAACGACGTGTACTTCCAGGTGGGTCTGTTGGTGACCATCG GTCTGGCGGCGAAAAACGCCATTCTGATCGTCGAGTTCGCCAAGGAACTGCACGAACAGGGCCGCAGCCTGGTGGACGCGGCGATCGAAGCCTGCCGCAT GCGTCTGCGTCCGATCGTCATGACCTCCCTGGCCTTCGTGCTTGGTGTGGTACCGCTGGCCATCTCCACCGGCGCAGGCTCGGGTAGCCAGCATGCGATC GGTACCGGGGTAATTGGCGGTATGCTCACCGCGACTGTCCTGGCGATATTCTGGGTACCTTTGTTCTTCGTCACCGTGTCCAAGATGGGCCGCCGCAAGG CAGACGAAGCGGAAACTATTGAAACTCCTGAAGAGGCTGGCCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAAGTCGCTACTCTCCCTCGCAATCACCGCCGCCGTGCTGAGTGGTTGCTCGCTGATACCGGATTATCAGCAGCCGCAAGCGCCGGTCGCGGCGCAATA CCCGCAAGGGCCGGCTTATTCACCTGCGGAGGCTGCCAACCAGGCAGCCGCCGAACAGGGCTGGCGGCAGTTCTTCCATGACCCTGCCCTGCAGCAGCTG ATCCAGACCGCGCTGGTGAACAACCGTGACCTGCGGGTCGCGGCGCTGAACATCGACGCCTACGCCGCGCAGTACCAGATCCAGCGCGCGGACCTGTTCC CGGCGATTTCGGCCACCGGCAGCGGCAGCCGTCAACGTACCCCGGCACGGATGTCGCAGACCGGTGAAGCGGCCATCTCCAGCCAGTACTCGGCAACCCT GGGTGTCAGCGCCTATGAGCTGGACCTGTTCGGTCGCGTTCGCAGCTTGAGCGAGCAGGCCTTGCAGACCTACTTCTCCAGCGAAGAAGCCCGGCGCAGT
Amino Acid Sequence
>multidrug transporter
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNS DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLLVIGVVSEDGSMSKDDLSNYIVSNMQDPISRTAGVGDFQVFGAQYAMRIWLDPAKLNNFNLTP VDVKTAVAAQNVQVSSGQIGGLPALPGQQLNATIIGKTRLQTAEQFKAILLKVNADGSQVRLGDVADVALGGENYSVSAQFNGAPASGLAVKLANGANAL DTAKALRKTISDLEPFFPEGMKVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAAGFSINTLTMFGMVL AIGLLVDDAIVVVENVERVMAEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITVVSAMALSVLVALIFTPALCATMLKAI PHGEHAAPKRGFFGWFNRTFDRSVKSYERGVGNILRHKAPYLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSSERTQVVVDEMRAYLLD KEKDTVASVFTVNGFNFAGRGQSSGMAFIMLKPWDERSAENNVFNLAARAQQHFFTFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHEKLMEARNQ FLGMAAQSKVLSQVRPNGLNDEPQYQLEIDDEKASALGVTISDINNTLSIALGSSYVNDFIDRGRVKKVYIQGQPNARMSPEDLKKWYVRNSAGTMVPFA SFAKGTWIYGSPKLARYNGVEAVEVLGAPAPGYSTGEAMAEVEAIAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWSIPIAVM LVVPLGIIGALMATSLRGLSNDVYFQVGLLVTIGLAAKNAILIVEFAKELHEQGRSLVDAAIEACRMRLRPIVMTSLAFVLGVVPLAISTGAGSGSQHAI GTGVIGGMLTATVLAIFWVPLFFVTVSKMGRRKADEAETIETPEEAGQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site