Pseudomonas sp. URMO17WK12:I8, F639_RS0124925
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I8 F639DRAFT_scaffold00010.10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGCTGTGTGGCGGTGAGCGTCTGACTGCCGGTGAATTCGCCAACGGTGCCTTCGTCGCGCCGACCGTGTTCACCGACTGCAGCGACGACATGACCATCG TCAAGGAAGAAATCTTCGGCCCGGTGATGAGCATCCTCACCTACGAAACCGAAGAAGAAGTCATCCGCCGCGCCAACGACACCGACTACGGCCTGGCCGC CGGTGTCTGCACCAACGACATCTCGCGCGCCCACCGCATCATCCACCAGCTGGAAGCCGGTATCTGCTGGATCAACGCCTGGGGCGAATCGCCAGCCGAA ATGCCGGTTGGCGGCTACAAGCAGTCGGGCGTCGGCCGTGAGAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAAGTGGAGCTGG GCGGCTACAACTCGGTTTTCTAAGCCCTGTCTAGCCACGCCCGTGCCACTGCGCACGGGCGTTTCCGCTCCCTGATCACCGCCAACACGAGGGTACTTCC
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| DNA Sequence for Gene |
>F639_RS0124925
ATGTCCCAAGAATTCGATTACATCATCGTCGGCGCAGGTTCCGCCGGTAACACCCTGGCTGCCCGCCTGACCGAAGACGCAGGCGTTACCGTACTGCTGC TCGAAGCCGGTGGCCCCGACTACCGCTTCGACTTCCGCACCCAGATGCCAGCCGCCCTGGCCTTCCCGCTGCAAGGCCGCCGCTACAACTGGGCCTACGA GACCGACCCGGAGCCGTTCATGGACGGCCGTCGCATGGAATGTGGCCGCGGCAAGGGCCTGGGTGGCTCGTCGCTGATCAACGGCATGTGCTACATCCGC GGCAACGCCATGGACTTCGACGGCTGGGCAGAACTGCCAGGCCTGGAAGACTGGACCTACCTGGACTGCCTGCCGTACTTCCGCAAGGCCGAAACCCGCG ACATCGGCCCGAACGACTACCACGGCGGCGATGGCCCGGTCAGCGTGGCCACGCCGAAAGCCGGCAACAACCCGCTGTTCCACGCCATGGTTGAAGCCGG CGTGCAGGCCGGTTACCCGCGCACCGAAGACCTCAACGGTTACCAGCAGGAAGGCTTCGGCCCGATGGACCGTTCGGTGACCAAGAACGGCCGCCGTTCC AGCACCGCCCGTGGTTACCTGGACCAGGCCAAGAAGCGCCCGAACCTCACCATCGTCACCCACGCCCTGAGCGACCGCGTGCTGTTCGACGGCAAGCGTG CCATTGGCGTGACCTACCTGGTCGGCGACAGCGAAGAGCGCGTCGAAGCCCGTGCCCGCAAGGAAGTGATCGTCAGCTCCGGCGCCATTGCTTCGCCGCA ACTGCTGCAGCGCTCCGGCGTCGGCCCGCGCGCCCTGCTGGAAAGCCTCGACATCCCGGTCGTGCACGACCTGCCGGGCGTCGGCGAGAACCTGCAGGAC CACCTCGAGCTGTACCTGCAGTACGCCTGCACCCAGCCCGTGTCGCTGTACCCATCGCTGCTGTGGTGGAACCAGCCGGCCATCGGTGCCGAGTGGATGT TCAAGGGTACCGGTATCGGCGCCAGCAACCAGTTCGAGGCCGGTGGTTTCATCCGCACCCGCCCTGAGTTCAAGTGGCCGAACATCCAGTACCACTTCCT GCCGGTGGCGATTAACTACAACGGCTCCAACGGCGTGAAGGAACACGGGTTCCAGGCGCACATGGGTTCCATGCGTTCGCCTGCCCGTGGTCGCGTCCAG GCCAAGTCGAAAAACCCGCGCCAGCACCCGAGCATCCTGTTCAACTACATGTCCACCGAGCAGGACTGGCAGGAATTCCGCGACGGCATCCGCCTGACCC GCGAAATCATGGCCCAACCGGCGCTGGACCCGTATCGCGGCCGCGAAATCAGCCCCGGCGCCCACGTGCAAACCGATGAAGAGCTGGACAAGTTCATCCG CGAGCACGCCGAAACCGCTTTCCACCCTTCCTGCTCGTGCAAGATGGGCACCGACGACATGGCGGTGGTCGACGCCGAGGGCCGCGTGCATGGCATGAAA GGCCTGCGCGTGGTCGACGCATCGATCATGCCGCTGATCATCACCGGCAACCTCAACGCCACCACGATCATGATCGCCGAGAAAATCTCGGACAAGATCC GTGGCCGCAAGCCGCTGCCACGCAGCACCGCCAAGTACTATGTGGCGGGCGATGCACCGGTGAGGGGCAAGCCGATGCGTGAAGTGAAGCAGGCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGGTACTGGCCCCTTCGCGGCTAAAGCCGCTCCCACAGGTAGCGCATCGCTTTCGAGCCTTGTGATCACCCTGTGGGAGCGGGTTTACCCGCGAAAGG GCCATGCCAGGCATCATAGAAAAAGGCACCCATCGCGGTGCCTTTTCTACATCTGCAGAAACGCTTTACATGCTGCCAATTCATCAGGTTAGAATCGATT GGCACGCGACTTGCCAGTCAAGCCCCCTTCCCGCGATATCCCGGAGTACCTGCCTTTGGATGCAAGCACCATCAACAGCCTGTTTCTGATCGGCGCATTG CTGGTGGGCGCAAGTATCCTGGTCAGTTCGCTGTCGTCGCGCCTGGGCATCCCTATCCTGGTCATCATCCTCGCCGTCGGCATGGTCGCCGGTGTCGATG GTGGCGGCATCATCTTCAACAACTATCCGACCGCCTACCTGGTGGGCAACCTTGCACTGGCCGTGATCCTGCTCGACGGTGGCCTGCGTACGCGAGTGGC
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| Amino Acid Sequence |
>choline dehydrogenase
MSQEFDYIIVGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYETDPEPFMDGRRMECGRGKGLGGSSLINGMCYIR GNAMDFDGWAELPGLEDWTYLDCLPYFRKAETRDIGPNDYHGGDGPVSVATPKAGNNPLFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRSVTKNGRRS STARGYLDQAKKRPNLTIVTHALSDRVLFDGKRAIGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQD HLELYLQYACTQPVSLYPSLLWWNQPAIGAEWMFKGTGIGASNQFEAGGFIRTRPEFKWPNIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPARGRVQ AKSKNPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYRGREISPGAHVQTDEELDKFIREHAETAFHPSCSCKMGTDDMAVVDAEGRVHGMK GLRVVDASIMPLIITGNLNATTIMIAEKISDKIRGRKPLPRSTAKYYVAGDAPVRGKPMREVKQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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