Pseudomonas sp. URMO17WK12:I8, F639_RS0120355
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I8 F639DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCCTTCAGGCCCGTCAGGCTCTGCAGCAACAGGGTCTGGCCTGGTTTTCCGGCCAGGTCGCCGCGCTTGAGCACCGCACTGATAGCGCCTTCGCAGGC TTGGTCGATGGCCTTGGCGACAGTACCGAGCTTGCGCCCTTCACCGACCGCCACGACCAGTGTGGCGGTTTTTACGGATGCAGCAGCTACGCTTTTTACA ACCAGTTCCATGTCAGGGTCCCCGAATGATCTATGCAGTTGGCGCTATGCGTTTTCGCGCTCTGGACGGGCCTGGCCGCGATGTCGCGCACCAGTGGAAA AGCTGCCAGTTTGAGCCTCTGGCAAGCGTGCTGACAAGCCCGATGTGGGCCTTCATGCGCAGCCAAGTGACAGGCGCCACCAATCACAGGATAATGCGCG CACTTTATATGGAGGTTCGCCTTTGGCGAACCAGCTTTGGTCCTGGCTGTCACAGGCCAATGTTTGGCAGTCCGCCCCTGACAACCCAGGAGTGTCTGGT
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| DNA Sequence for Gene |
>F639_RS0120355
TTGATCGTCTTTCGTTATCTGTCCCGCGAGGTCCTGGTGACCTTGAGCGCCGTCAGCGCCGTGCTGTTGGTAATCATCATGAGCGGGCGTTTCATCAAAT ACCTGGCCCAGGCGGCCCAGGGCATCCTCGATCCGGGCGTGCTGTTCCTGATCATGGGTTTCCGCATGCCAGGTTTCCTGCAGCTGATTCTGCCGCTAGG TCTGTTCCTCGGGATTCTCCTGGCATATGGCCGGCTGTACCTGGAAAGCGAAATGACCGTCCTTTCGGCGACCGGCATGAGCCAGCAGCGTCTGCTGGGG CTGACCATGGCGCCAGCTGCGCTGGTCGCATTGCTGGTCGCCTGGCTGAGCCTGAGCCTGTCACCCTTGGGCGTAGCTCAGGTGCAGAAGATCATTGCCC AACAGGATGCCATGACGGAGTTCGACACCTTGGTGCCGGGCCGCTTCCAGACTTTGCGCGACGGTTCACGGGTCACCTACACCGAGCAGCTGTCCGACGA CCGCGTCAAGCTGGCCGGGGTGTTCATTTCCGAGAAGCGCTTCAATCAGGACAAGACCAAGGACCGTGCTCCTTCGGTACTGGTCGCCGAGAAAGGCCAT CAGGAAATACAGGCCGATGGCAATCGCTATCTGGTGCTGGAGAACGGCTACCGCTACGACGGTAACCCGGGCCAGGCGGACTACCGTGCCATCAAGTACG ACACCTACGGTGTATTGCTGCCAAAGCCGGAAGTCGCCGAGGAAGTGACCGATCGCGAAGCGATCCCGACCCTTGAGCTGTTCAGCAAGACCGACCTGCG CGAGCGTGCCGAGTTGCAATGGCGCCTGTCGCTGCCGATCCTGGTGTTCATCGTGACCTTGATGGCGGTGCCGCTGGCCAGGGTCAATCCACGCCAGGGC CGCTTCCTCAAGCTGCTGCCGGCGATTCTTCTGTACATGGCTTACCTGACAATGCTGATTTCCGTACGCGGCGCCCTTGAGAAGGGCAAGTTGCCGATTG GCCTGGGCATCTGGTGGGTGCACGGCCTGTTCCTGCTGATCGGCCTGGCCCTGATGTACTGGGAACCGCTGCGCCTGAAAATGGCTGCCCGTCGTGCGGA GGTGGCCCATGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCGACCGCTATATCGGCCAGAGCGTGCTGCTGGCCATTCTGGCCGTGCTGGGGATCATTCTCGGCCTGGCCTCGCTGTTCGCCTTCATCGACGAGATG GGCGAACTGAGCGACACCTACACCTTGCTGGATGCGGGTAATTTCGTCCTGCTGACTGCGCCTCGGCGCCTGTACGAAATGCTGCCGATGGCGGCGCTGA TCGGCTGCCTGATCGGTCTCGGCAGCCTGGCCAGCAACAGTGAGCTGACCATCATGCGTGCCGCCGGTGTCTCCATCGGCCGCATCGTCTGGGCGGTGAT GAAACCGATGCTGGTGCTGATGGTGGTCGGCCTGCTGATTGGTGAATACGTCGCCCCGGTCACCGAGAACAAGGCCCAGGCCGACCGTTCGCTGGCCCAG GGTGGTGGTGAAGCGCAAAGCTCCAAGCATGGCATGTGGCACCGCCAGGGCGAGGAGTTCGTGCACATCAACTCCGTGCAGCCCAATGGCTTGCTGCTGG
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| Amino Acid Sequence |
>permease
MIVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGILDPGVLFLIMGFRMPGFLQLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLG LTMAPAALVALLVAWLSLSLSPLGVAQVQKIIAQQDAMTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRVKLAGVFISEKRFNQDKTKDRAPSVLVAEKGH QEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLLPKPEVAEEVTDREAIPTLELFSKTDLRERAELQWRLSLPILVFIVTLMAVPLARVNPRQG RFLKLLPAILLYMAYLTMLISVRGALEKGKLPIGLGIWWVHGLFLLIGLALMYWEPLRLKMAARRAEVAHG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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