Pseudomonas sp. URMO17WK12:I8, F639_RS0102735
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I8 F639DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACTTCCAGCAGGTAGGTGGCATCGAGTGCTACCCGGTCACCGGTGAAATCACCTACGGCCTCGAGCGCCTGGCCATGTACATCCAGGGCGTCGACTCGG TCTACGACCTGGTGTGGGCCGACGGCCCGTTCGGCAAGGTCACCTACGGCGACGTGTTCCACCAGAACGAGGTAGAGCAGTCGACCTACAACTTCGAACA CGCCAACGTCGAGAAGCTGTTCGAACTGTTCGACTTCTATGAAAGCGAAGCAAACCGCCTGATCAAGCTGGAGCTGCCGCTGCCGACCTATGAAATGGTC CTGAAGGCCTCGCACACCTTCAACCTGCTCGATGCCCGCCGCGCCATCTCGGTAACCGAGCGCCAGCGTTACATCCTGCGCGTTCGTACCCTGGCCCGGG ACGTGGCGCAAAGCTATCTGCAAGCCCGCGCACGCTTGGGCTTCCCGATGGCCACCCCTGAACTGCGTGACGAAGTGTTGGCGAAGCTGGAGGCTGCACA
|
|
| DNA Sequence for Gene |
>F639_RS0102735
ATGAGTGCTCAAGATTTCCTGGTAGAACTGGGCACCGAAGAGCTGCCACCCAAAGCCCTGGCAAGCCTCGGCGACGCCTTCCTGGCCGGTATCGAGAAAG GGCTGCAGGCCGCCGGCCTGAACTACACCGCCAAGCAGGTATACGCCGCGCCGCGTCGCCTGGCCGTGCTGATCCGCCAGCTCGATGTTCAGCAGCCTGA CCGCAGCATCAACATCGACGGCCCGCCCATGCAGGCTGCTTTCAAAGACGGCGAGCCGACCCAGGCTGCCTTGGGCTTTGCCAAGAAGTGCGGCGTAGAG CTGTCCGAAATCGACCAGAGCGGCGCCAAGCTGCGCTTCTCGCAGCACATCCCGGGCAAGGCCACCGCCAGCCTGCTGCCGACCATCGTCGAAGATTCGC TCAACGACCTGCCGATCCCCAAGCGCATGCGCTGGGCCGCCAGCCGTGAAGAGTTCGTGCGCCCGACCCAGTGGCTGGTAATGCTGCTTGGCGACCAGGT GGTCGACTGCACCATCCTGTCGCAGAAGGCCGGCCGTGAGTCCCGTGGCCACCGCTTCCACCACCCGGAAAACGTGGTCATCACTACCCCGGCCAACTAC GTCGAGGACCTGCGCAAGGCCTACGTGCTGGCCGACTTCGCCGAGCGTCGCGAGCTGATCAGCAAGCGCACCGCAGAGCTGGCCATGCAGCAGGAAGGCA GCGCCATCGTGCCGCCGGCACTGCTGGACGAAGTGACTGCCCTGGTCGAGTGGCCGGTGCCGCTGGTGTGCTCGTTCGAGGAGCGTTTCCTCGAGGTGCC GCAAGAAGCCCTGATCACTACCATGCAGGACAACCAGAAGTACTTCTGCCTGCTGGACAGCGAAGGCAAGCTGCTGCCGCGCTTCATCACCGTGGCCAAC GTCGAGAGCCGTGACCCCAAGCAGATCGTGCAAGGTAATGAGAAGGTCGTGCGCCCGCGCCTGACCGACGCCGAGTTCTTCTTCAAGCAGGACAAGAAGC AGCCACTGGAAACCTTCAACGAGCGCCTGAAGAACGTGGTGTTCCAGGCTCAGCTGGGCACTGTCTACGACAAGGCCGAGCGCGTTTCCCGCCTGGCTGC GTTCATCGCCCCGCTGATTGGCGGCGACGCCCAGCGCGCCGGCCGTGCCGGCCTGCTGTCGAAGTGCGACCTGGCCACCGAAATGGTTGGCGAATTCCCT GAAATGCAGGGCGTTGCCGGCTACTACTACGCGCTCAACGATGGTGAGCCGGAAGACGTCGCCCTGGCCCTGAACGAGCAGTACATGCCGCGCGGTGCTG GCGCCGAGCTGCCGCAGACCCTCACCGGTGCTGCCGTGGCCATCGCCGACAAGCTCGACACCCTGGTTGGCATCTTCGGCATCGGCATGTTGCCCACCGG CAGCAAGGACCCATACGCCCTGCGCCGTGCAGCCCTGGGCGTGCTGCGCATCCTGATCGAGAAGCAGCTGGACCTCGACCTGAGCGCTGCAGTCGAGTTC GCGGTCAAGCAGTTCGGTGCCAAGGTCAAGGCCGCTGGCCTGGCCGAGCAGGTGCTGGAGTTCATCTTCGACCGCCTGCGCGCACGCTACGAAGACGAAG GCATCGACGTTGCCACCTACCTGTCGGTACGTGCCCTGAAGCCGGCTTCCGCCCTGGACTTCGACCAGCGCGTACAGGCTGTGCAGGCCTTCCGCAAGCT GCCGGAAGCCGAAGCCCTGGCCGCGGTGAACAAGCGCGTGTCGAACCTGCTGAGCAAGGCCGAAGGCGCCATCGCCGACCAGGTCGAGCCGAAATACTTC GACAACGCCAACGAGTTCTCCTTGTACTCGGCCATCCAGCAGGCCGACCAGGCCGTGCAACCGATGGCAGCCGCGCGTCAGTACAGCGAATCGCTGGCCC GCCTGGCGGCCCTGCGTGACCCGGTCGACGCCTTCTTCGAGGCGGTGATGGTCAACGCCGAAGACGCCAAGGTACGTGCCAACCGTTATGCCCTGCTCAG CCGCCTGCGCGGCCTGTTCCTGGGTGTGGCCGACATTTCGCTGCTGGGGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCTTGAAACTGCTGATTCTCGATCGTGACGGGGTGATCAACCAAGACTCCGACGCCTACATCAAGACGCTGGAAGAATGGATTCCGATCCCTGGCTCGG TCGAGGCCATCGCGCAGTTGAGCAAGGCTGGCTGGACGGTGGCCGTGGCCACCAACCAGTCCGGCATCGCCCGTGGCTACTACTCGCTGGCCACCCTGGA GGCCATGCACGCGCGCTTGCGCGAGCTGGTGGCCGAGCAGGGCGGCGAGGTGGGCCATATCGTGTATTGCCCGCACGGGCCAGATGAAGGCTGCGATTGC CGCAAGCCCAAGCCTGGCATGCTGCGGGCGATCGCCGAGCATTACCAGGTAGGCCTTGAAGGCGTCTGGTTCGTTGGCGACAGCAAAGGTGACCTGGAGG CCGCCCTGGCCGTCGGTGCACAACCCGTGTTGGTGAAAACCGGCAAGGGCGAGCGGACCCTGGAAAAAGGCGTCCCGGAAACTACACTGATTTTCGACGA
|
|
| Amino Acid Sequence |
>glycine-tRNA synthetase subunit beta
MSAQDFLVELGTEELPPKALASLGDAFLAGIEKGLQAAGLNYTAKQVYAAPRRLAVLIRQLDVQQPDRSINIDGPPMQAAFKDGEPTQAALGFAKKCGVE LSEIDQSGAKLRFSQHIPGKATASLLPTIVEDSLNDLPIPKRMRWAASREEFVRPTQWLVMLLGDQVVDCTILSQKAGRESRGHRFHHPENVVITTPANY VEDLRKAYVLADFAERRELISKRTAELAMQQEGSAIVPPALLDEVTALVEWPVPLVCSFEERFLEVPQEALITTMQDNQKYFCLLDSEGKLLPRFITVAN VESRDPKQIVQGNEKVVRPRLTDAEFFFKQDKKQPLETFNERLKNVVFQAQLGTVYDKAERVSRLAAFIAPLIGGDAQRAGRAGLLSKCDLATEMVGEFP EMQGVAGYYYALNDGEPEDVALALNEQYMPRGAGAELPQTLTGAAVAIADKLDTLVGIFGIGMLPTGSKDPYALRRAALGVLRILIEKQLDLDLSAAVEF AVKQFGAKVKAAGLAEQVLEFIFDRLRARYEDEGIDVATYLSVRALKPASALDFDQRVQAVQAFRKLPEAEALAAVNKRVSNLLSKAEGAIADQVEPKYF DNANEFSLYSAIQQADQAVQPMAAARQYSESLARLAALRDPVDAFFEAVMVNAEDAKVRANRYALLSRLRGLFLGVADISLLG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|