Pseudomonas sp. URMO17WK12:I8, F639_RS0100905 (ampC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I8 F639DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CACGTTGCCGCGGGCCAGCGAGGTGAAGGCGATGGCCGACTGCACGGTGGCCGGCAGCGCGCACAGGTACAGCACGCCCAGGTACAGCTCGTTGCCCACC AGCGGCACGAACAACGGTTTGAACGCCAGGCCCAGCAGCGGGAACATCACGAACGTGCAGGAGAACACCAGCAGATGCAGACGCCAGTGGCCAGCACCGG CGATGATCGCCTCGCGCGACAGCTTGGCACCGTGCAGGAAAAACAACAGGCCGATCGCCAGGTTGGTCAACCAGCCAAAATACACCGCGCCGTCGCCCGA GCAAGGCAGCACGGTGGCGATCAGTACCACCCCGAGCAGGCATAGGGTGAAGTTGTCGAACAACATGCGCAAATACTTCATAACGTTTTCCATCTTGTCG TTGTGCAAGGGCAGACGATAAGGTCTGAGGCTTTTTCCTGCTAACGCCGGAACCCCCATCGGTGTCGCTCAACGGACACTCTCACAAATAGGACCTTTGC
|
|
| DNA Sequence for Gene |
>F639_RS0100905
|ampC
ATGCCACGTGTACGTCTCGCCCCACTGCTCATCCTGTTCGGCCTCGCCTCGGCGCACGCTGCCGGGCCGATGCAGGCCAAAGTGGACGAAGTTATCCGGC CCCTGATGAAAGAGCAGGACATCGCCGGCATGGCCGTGGCGGTCTACGTCAACGGTCAGGCCCACTACTTCAATTATGGCGTGGCCAGCAAAGCCGACAG CAAGGCGGTAACTGCCGACACGCTGTTCGAGATCGGCTCGCTGAGCAAGACCTACACGGCCACCCTCGCCGCCCTGGCCAGCGCCGAAGGCACGCTCGAC CTGAACGCCCCTGCCCGGCGCTACCAGCCAGCGCTTGCCGGTGCGCCTCTAGGCGACCTCAGCGTGCTGGAGTTCGGGGCCTACAGCGCCGATTGCCTGC CATTACAGTTCCCGGACGCAGTGCAGACCCCAGAGCAGACGCTGGCATTCTTCCGCAATTGGCAGCCGCGCAGCGAGCACGGCACCCAGCGTTGCTACTC CAACCCGAGCCTGGGCCTGTTCGGCGACCTTGCGGCGCGTGCGCAGCAGCGCACCTTCGCCGATGTCATGACCAGGCACCTGTTGCCAGAGCTGGGCTTG CGACACACGTACCTGCAGGTACCACAAAGCGAGCAAGGCCTGTATGCCCAGGGCTATGACGCGCAGAACCGCCCCGTGCGGGTCAGCCCTGGCCCGTACG CCGACGAAGCCTATGGCATCAAGACCAGCGCCAGCGACCTGCTGCGTTACCTGCGCCTGAACATGCAAGCGAGCGAACTTTCAGCGCCACTGCGCAAAGC CATCGCCATCACCCAGGCCGGTTACTTCAGCGTCGGCAACATGACCCAGGGCCTGGGCTGGGAGCGCTACCCCTACCCGGTCAGCCTGGACACCCTGGTC GATGGCAACAGCCCGCGGCTGATCCGCGAACCCCAGGCCACTCAGCGCCTGAACCCGCCTCTGCCTGCACTGCCGGCGGCCTGGTACAACAAGACCGGCT CCACCAACGGCTTCGGCGTCTACGCCGCCTTCATCCCAGCCGAAGGCAAGGCCATCGCCCTGCTCGCCAACCGCAATTACCCTAATGAAGCCCGTGTGCG CGCGGCCTTCCAGATCCTGTCCAAACTTGACCGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTCACTGCCAGATGGATTGTCAGACAATATGTAGTGAGAAAAAATATTCACTACAAAACCATTGACGCCATTCCTCGCCCTTGTGCATGATGAAGCCGTC TCCCTGATCGGGAGCGGTGGCAAGGGTGTTCCAGACGGTTTGCGCGGTAACGCAGGCCGTCCGTGGAGAGGGAATCTGTCCAAAAGGCAGCGTGAGAAAG CCCCTGTTGCGATGCTGCTGTAGCAGCCTTGGTAGTGCGCTACAACCTGTGGCGCCAACTGTGACAATCAACAACAAATAGGTGATGGGGGCTTTATGAT GAACTTGAACAACAATCCGACAATCGACCAATTGGCCCAGCTGTTCGCAGTACGCAAGGACAGCCTCGACGACCACCTGCTGTGGGTCAGCCAGACCGGC GAGGTGCGCATCGACCGCCTGCCGCCGAACACTGTCGAAGATGAATTTGAAGCGCACCTGCCTAGCATGCGCGCACGCTTCAAGGTCTACCGCCGCGGCC
|
|
| Amino Acid Sequence |
>beta-lactamase/D-alanine carboxypeptidase
MPRVRLAPLLILFGLASAHAAGPMQAKVDEVIRPLMKEQDIAGMAVAVYVNGQAHYFNYGVASKADSKAVTADTLFEIGSLSKTYTATLAALASAEGTLD LNAPARRYQPALAGAPLGDLSVLEFGAYSADCLPLQFPDAVQTPEQTLAFFRNWQPRSEHGTQRCYSNPSLGLFGDLAARAQQRTFADVMTRHLLPELGL RHTYLQVPQSEQGLYAQGYDAQNRPVRVSPGPYADEAYGIKTSASDLLRYLRLNMQASELSAPLRKAIAITQAGYFSVGNMTQGLGWERYPYPVSLDTLV DGNSPRLIREPQATQRLNPPLPALPAAWYNKTGSTNGFGVYAAFIPAEGKAIALLANRNYPNEARVRAAFQILSKLDR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|