Pseudomonas syringae DSM 10604, PSSR_RS0122410 (ampC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig47, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGTTGACGAAGCCCAGCATCACCGGATACGGCACCAGCCGCACCAGTTTGCCGAGCCGCAGCAAGCCGAACAGGATCATGATCAGACCGCCCAGCAATA CGGTCGCCAGCAAATACTGCACACCCTGCTGAACCACCAGCGCGACGATCACCACGGCCATGGAACCGGCCGCACCGGACACCATGCCCGGACGCCCGCC GAACAGCGCGGTCAGGGTACAGATGATGAACGCACCGTAGAGCCCCATCAGCGGATTGAGATGGGCCACCAGCGCAAAGGCGATGCACTCGGGCACCAAT GCAAAAGATGTGGTGAGGCCTGCCAGGACTTCGGCACGTATACGGATCGTTTTCATGGGTTACCTGAGCGGCGCTCCATGGAGGAAGCGCAAAAAAGGGG GCATATTACGCAAACCTTTGACGACCGACCACCACGGTGGGGCTTCCAGGAAAGCTCTCTGATGATCGGCCCATGCCCCAAAACAACAAGGAACAATCCA
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| DNA Sequence for Gene |
>PSSR_RS0122410
|ampC
ATGCAATGGAATGGAGCGCTGCTCTGCACAGGACTTCTGCTGTTCAATGCGGTGGCTGTTGCCGACGATGACACAGCGTCTGTCGACGCATTCGTGCAGG CAGAAGCCAGCAAAGTGATGCAGGAAAATCATATCGCGGGCCTGTCGATCGCCGTTACTCGCCGGGGCAAACAGCAGTTCTACACCTATGGCGTCGCGTC AAAAGCCACCGGCCAGCCAGTCACCCGCGATACGCTGTTTGAACTCGGCTCGATCAGCAAGACCTTAACCGCCACCCTCGCTACCTGGACGCAGGCCAAT GGGCAGCTGTCGCTGACGCAAAGCATCGACAGCTATATTCCGCAGTTACAGGCCACGCGGCTGGGCAAGGTGCCGGTTTTCCATCTGGGCACCCACACAG CTGGCGGCTTCCCGCTTCAGGTGCCGGATAAAGTGCAAAACACCCGCCAGTTGATGGAATATTTCAAGGCCTGGCAGCCCGACTATCTGCCCGGCACCCA TCGCACCTACGCCAACCCCAGTGTGGGCCTGCTCGGCATGGTTGCGGCGCGCAGCATGAAACTGCCGTATGAACAGGCTCTGCAGCAGCGGCTGTTTCCG GCGCTGGGTCTGAGTAATACCTATATCAACGTGCCCGATGAAAAACAGGCGCTGTATGCGCAGGGCTACAACAAACTCGACGAGCCGGTCAGGGTCAATC CAGGTCCACTGGCGGCTGAAGCGTACGGAGTGAAATCGAGCAGCAGCGACTTGCTACGCTTCGTCGAAGCGAACATCGGGCTCGGTCAAAACGACGCCGC GCTGCAAAAAGCCCTGCGCGATACCCGGACCGGCTATTTCAAGGTCGGCGGCATGACTCAGGACCTGATCTGGGAGCAGTATCCGCTGCCGGTTCATCTG GATACGCTGCTTGAGGGCAATGCCAGCGCCATGCTGAACACGGTCAAAACCGAAATGATCGAGCCACCGCAGGCAGCGCAATCTTCGGTCTGGGTCAACA AAACCGGATCAACCAACGGTTTCGGCGGCTATGTGGCGTTCATTCCGGAGCAGCAGTTGGGGATTGCCATCCTCGCCAACAAAAACTACCCGAACGAGGA GCGGGTGAAACTGGCTTATCGGATTCTGCAGAAAATGGGCTGCTGCTCAACGCCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAACAGTCCTGTCCCCTCGGCCGCTTCGATTTCAAGCAGCTTGCGCTTGCGCTCGACGCCCCAGCGGTAGCCCGACAACGATCCATCGCTGCGCACCACG CGGTGGCAGGGAATGGCCACTGCGAGCTTATTCGCACCGCAGGCATTGGCAACCGCACGGACTGCACTGGGCAGTCCTATCTGCGTCGCGATCTGCGTGT AGGTGGCCGTCGATCCGGCAGGAATGTCCCTGAGCGCCTGCCAGACCCGCTCCTGAAACACCGTGCCGCGGATATCCAGTGGCAGCGCCAGGCCGGTCTC GGGTGATTCGACAAAACCCACGACCTCGGCAACCAGTTGTTCGAACGCTGCGTCTGCGCCGATCAGGTTGGCGTTGGGGAACTGGTCCTGGAAAGTTTCG ATCAGCGCATGCGGGTCATCACCGAGCGAAATTGCACAGATGCCCTTGCTGCTCGTGGCCACCAGAATCGAACCCAGCGAACTTTCACCCAGAGCGAACC
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| Amino Acid Sequence |
>beta-lactamase/D-alanine carboxypeptidase
MQWNGALLCTGLLLFNAVAVADDDTASVDAFVQAEASKVMQENHIAGLSIAVTRRGKQQFYTYGVASKATGQPVTRDTLFELGSISKTLTATLATWTQAN GQLSLTQSIDSYIPQLQATRLGKVPVFHLGTHTAGGFPLQVPDKVQNTRQLMEYFKAWQPDYLPGTHRTYANPSVGLLGMVAARSMKLPYEQALQQRLFP ALGLSNTYINVPDEKQALYAQGYNKLDEPVRVNPGPLAAEAYGVKSSSSDLLRFVEANIGLGQNDAALQKALRDTRTGYFKVGGMTQDLIWEQYPLPVHL DTLLEGNASAMLNTVKTEMIEPPQAAQSSVWVNKTGSTNGFGGYVAFIPEQQLGIAILANKNYPNEERVKLAYRILQKMGCCSTP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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