Pseudomonas syringae DSM 10604, PSSR_RS0121245
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig45, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACGCCATGCTCGCCTGCCGGGAGCGCAGCACATTCATTCCGATTCTGGCGAACAGTTTTGCGCGACACACCACCGAGGTGCTGGTCGATCACGCCGAAC GCGAGCACGGCGACTCCAAATATAGCCCGATGCGTCTGATCAACCTCATGTTCGACCTGATCACCTGCATGACCACCACGCCGCTGCGCCTGCTCAGCAT CATCGGCTTCAGCATGGCATTGCTCGGTGTCTCGTTCGCGGCGCTGCTGATCGTTCTGCGCCTGATCTTCGGCGCGTCATGGGCCGGGGACGGCATGTTC GTACTGTTTGCCGTGCTGTTCGTATTCACCGGAGGGCAGTTCATCGGCATGGGACTGCTGGGTGAATACCTGGGCCGGATGTACAGCGATGTGCGTGCGC GTCCGCGGTTCTTTATCGAAAAGGTCGTGCGCAGCTCGTCACCGGTTGCCACCGACAGCATTGATTCCTCTGTAACTCCCTATATGAACAAGGTCGCGCT
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| DNA Sequence for Gene |
>PSSR_RS0121245
ATGAGCACTAAAGCTGTCGTTTTCGCTTATCACGATATTGGCTGTGTCGGCCTGCAAGCGTTGCTGGATGCAGGCTATGAGATTGCGGCGGTGTTCACCC ATGCCGACGACCCCAAAGAAAAAACCTTTTTCGGCTCTGTGGCGCAGATGTGCGCCCGGCACGGCATTGCAGTGCATGCCCCCGAGGACCCGAATCACCC GCTATGGGTAGAGCGCATCGGCAAACTGGCGCCGGACTTCATTTTCTCCTTCTACTATCGCCAGCTGCTCGGCGATTCGCTGCTGGCCTGCGCGAAAAAA GCTGCGCTGAACCTGCATGGCTCGCTGCTCCCGCGTTATCGCGGACGCGCGCCGGCCAACTGGGTGCTGGTCAACGGCGAAAGTGAAACCGGCGTTACCC TGCATCAGATGGTCAAACGCGCCGATGCCGGGCCGATAGTCGCTCAGCAGCGGGTATCGATCAGTGCCACCGATACTGCCTTGACGCTGCATGGCAAATT GCGTGACGCCGCCGCTGACCTGCTCTGCGAGACACTGCCCTTGCTCGCCGCACAAGGGCAACTGCCAGCTACGCCCCAGGATGAATCCCGTGCGACGTAT TTCGGTCGGCGCACCCCGGCCGACGGTTTGATCGACTGGTCGCTGCCGGCTACCCAGCTCTACAACCTGATCCGTGCGGTAACACAGCCCTACCCTGGCG CGTTTTGCACGGTCGGCGACAACAAGCTGATCATCTGGGCTGCCAGCGTGGACACGAGCAGCAATGGCGAGGCGCCCGGCACGGTCATCAGTCACGAGCC ATTGCGTATCGCCTGTGGCGAGGGTTCGCTGGTCATCACCGCAGGGCAACGCGGTGACAACGGCTTGTACCTCAGTGGTGCGCAACTGGCGCGCGAATTC GGGTTGGTAGCAGGCTCACAACTGCTCGACAAGGCAAAGCGCCGGTCGGTTCGTCGTACCCGAGTGTTGATCCTCGGCGTCAACGGTTTCATCGGCAACC ACCTGTCCGAGCGTCTGCTGCAGGATGACCGTTACGAAATCTACGGCATGGATATCGGCTCGGACGCCATCGAGCGCCTGCGTGCCAAGCCGAACTTTCA TTTCATCGAAGGTGACATCAGCATCCATACCGAATGGATCGAATACCACATCAAGAAATGCGATGTCGTGCTGCCGCTGGTGGCCATCGCCACGCCGATT GAATACACGCGCAATCCACTGCGGGTTTTCGAGCTGGATTTCGAAGAGAACCTGAAGATCGTTCGCTACTGCGTGAAGTACAACAAGCGCGTGATTTTCC CGTCCACGTCCGAAGTCTATGGCATGTGCCAGGACGCAAACTTCAACGAAGACACCTCCAACCTGATCGTTGGCCCGATCAACAAGCAGCGCTGGATCTA CTCGGTGTCCAAGCAGCTGCTGGACCGGGTGATCTGGGCCTATGGCCAGAAAGGCCTGCAATTCACCCTGTTTCGCCCATTCAACTGGATGGGACCGCGT CTGGACCGCCTGGACTCGGCGCGCATTGGCAGTTCGCGGGCCATCACCCAACTGATCCTGCACCTGGTGGAAGGCACGCCCATTCGCCTGGTGGATGGCG GCGCCCAGAAGCGCTGTTTCACCGATGTCGTCGACGGCATCGAGGCGCTGGCGCGGATCATCGAAAACCGTGATGGGCGCTGTAACGGACAAATCATCAA CATCGGCAACCCCGACAACGAAGCCAGCATCCGTCAATTAGGTGAAGAGCTGCTTCGCCAGTTCGAAGCCCATCCGTTGCGCGGCCATTTCCCGCCCTTT GCGGGCTTTCGTGAAGTTGAAAGCCAGTCCTTCTACGGCAAGGGCTATCAGGATGTCAGTCACCGCACGCCGAGCATCGACAACGCCAAAAAGCTGATTG GCTGGACGCCGGGTATTGAGCTGAGCGAGACCATCGGCAAAACCCTGGATTTCTTCCTGCGCGAAGCCATGGCTGAAAAAGCGGATCAGTGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCAGGCAGGCTTGAGAATCGATGTCGACACTTACCGGGGCACGCGTGAGGGCGTGCCCAGGCTACTGGACATACTCGACGAAGCGCAGGTCAAGGCGAC CTTCTTTTTCAGTGTCGGACCCGACAACATGGGGCGCCATCTATGGCGCCTGGTAAGGCCTACGTTCTTTTGGAAGATGCTTCGCTCCAGGGCGGCGAGC CTGTATGGCTGGGATATTCTGCTGGCCGGTACTGCATGGCCGGGCAAACCGATCGGCCGTGACCTTGGCCCACTGATGCGCCGCGCGCTGGATGCAGGTC ACGAAATCGGCCTGCATGCCTGGGATCATCATGGCTGGCAAGCGAATGCCGGACACTGGAGCGACAGACAGTTGACTGCCCAGATACACCGTGGGGTCGA CTGCCTGAGCGACATCCTCGGCCATCCGGTAGTGTGCTCCGCAGCGGCAGGCTGGCGCGCCGACCAGCGCATTGTGCAGGCCAAAGAGGCGTTTGGCTTT
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| Amino Acid Sequence |
>UDP-4-amino-4-deoxy-L-arabinose formyltransferase
MSTKAVVFAYHDIGCVGLQALLDAGYEIAAVFTHADDPKEKTFFGSVAQMCARHGIAVHAPEDPNHPLWVERIGKLAPDFIFSFYYRQLLGDSLLACAKK AALNLHGSLLPRYRGRAPANWVLVNGESETGVTLHQMVKRADAGPIVAQQRVSISATDTALTLHGKLRDAAADLLCETLPLLAAQGQLPATPQDESRATY FGRRTPADGLIDWSLPATQLYNLIRAVTQPYPGAFCTVGDNKLIIWAASVDTSSNGEAPGTVISHEPLRIACGEGSLVITAGQRGDNGLYLSGAQLAREF GLVAGSQLLDKAKRRSVRRTRVLILGVNGFIGNHLSERLLQDDRYEIYGMDIGSDAIERLRAKPNFHFIEGDISIHTEWIEYHIKKCDVVLPLVAIATPI EYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYGMCQDANFNEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGQKGLQFTLFRPFNWMGPR LDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVVDGIEALARIIENRDGRCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGHFPPF AGFREVESQSFYGKGYQDVSHRTPSIDNAKKLIGWTPGIELSETIGKTLDFFLREAMAEKADQC
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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