Pseudomonas syringae DSM 10604, PSSR_RS0109695
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGAAACGGCTGTTGCCCTATCTGGGGCTTTTGAGCCTGCGCGCTCATTCGGCTGCCTTGATCGAGTCGGTGCTTCGTTATTACTTCAAGCACGCTCAGCT GTTTATCGAGCAGTGCGTTGAGCGAACCGTCGATGTTCGCAGCGTTCAGCTTAATTGCCTTGGAGTGACCAATCATCAGTTAGGACGCGCTGTTGTGCTG GGTAATCGGGTCCCTGATCGGAGTGGCAAGTTCCGCGTCCACGTGAAAGAACTCGATTGGGAGCGGTTCCACGAATTTTTACCCATCGGCCCTGGCTACC GTCCGTTGGGCGCTCTTGTCCGATTCACATTGCGCGACCCTTTGGACTACGACGTTTGTCTTGAGCTGCGCCATGAAGACATCAGAGAACTGCGCATTGG CCAATCGAACACCTGTCACCTGGGCTGGACCACATGGCTCGGGCGCGAGCATGCCCTGGGTCTGGTCATGCTCAACAGACCGATACATTAAGGACGACTC
|
|
| DNA Sequence for Gene |
>PSSR_RS0109695
ATGATCGATGTAGATTTGCAGCAACTCGTCAATGCCCTCGATGCGCCTACACGCGGAGAACTGGAGGGAACGGCCGAACGATGCGTTTCGAGAGGCAGCA GCAAAATTCTGGTTGAAGACCTGTTGCTTGCCCTGTTGGAAAGACCTGATGGAATGCTTGCCCGTGCGCTACTGGACGCCGAGGTTGGGGCTGACGAACT TGCAGGGTTTCTTCACCCGCCGGTCGAGCAAAGTGCTACCCGGAGCCCGGCATTTTCTGCTGAACTTGTTCAATGGCTTCAGGACGCGCTGTTGATTGCC AATCTGGATCTGGGCCAAAGCCTGATTGATCAGTCTGCGTTGATTCTTGCCTTGCTGCGTAATCCCTTGCGCTACGCCGACCGTCCATACCAGCCATTAT TGGCGAAGATTAATATCGAGCGCTTTCGCGATCATGCCCTTGCCGAACAGATGCCGGAGGTAACAAAACCGTCAGTGAATCAATGTGATTCGCTGCTCGA ACGCTTCACTCATAACCTGACGCAGCAGGCCAGGGAGGGGTTGCTCGATCCTGTGCTGTGCCGTGATGACTGTCTGCGTCAGATGATCGATATCCTGTCT CGTCGACGCAAGAACAATCCCATTGTGGTGGGCGAGGCGGGTGTCGGCAAGACTGCGGTTGTCGAAGGGCTGGCGCTTAAAATCGTTCACGGGGAAGTCC CCGATCTATTAGAAAACATTGAATTACTGTCTCTGGATATGGGGCTGCTCCAAGCGGGTGCCAGTATCAAGGGCGAGTTCGAGCGTCGTTTGAAGGGCGT AATTGACGAGGTCAAATCCTCATCCAGGCCGGTTATTCTTTTCATCGATGAAGCCCACACACTCATCGGCGCCGGCGCGCAGGCGGGCGGTTCGGATGCG GCCAATCTGTTGAAACCGGCGTTGGCACGCGGCGAGTTACGGACAATTGCAGCGACGACGTGGGCCGAGTACAGGCAATACTTTGAAAAGGATCCGGCGC TTGCACGCCGCTTTCAACCGGTCCGGGTGCTGGAGCCTACAGTAGAGCAGGCCATCACCATTCTGCGCGGGCTTGCTCCGCTATATGAACGTACTCATGG TGTCTATCTGCGCGATGATGCTGTAGTCGCCGCCGCCCGGCTTTCGGCGCGCTATATCACCGAGCGACAGTTGCCGGACAAGGCAATCGATCTGCTTGAT ACAGCTTGCGCTCGAGCACGAATCGGTCTGGTCGCCGTGCCGGAGCGTCTTGAATATCTACGAAGCGAGATGGCGCGTCAGCAGAGGCAGTCCGAGGCAG TGCTGCGTGATGCCAATGCCGGTCTGTCGGTTGATGACAAGGCATTGGAGACGCTGGCTTCCGATCTGTCACGGCTGCAGAGCGAGGCTGTAGCGCTGGA GTGTAGGTGGGCTGATCAACGGGCAGTCGTCGAGCGTCTGCTGGAATTGCGCAAACAACTGGCTGAACGAGCAGCACAGTCGGCTGAGGCGAGTGGGTGT GAGTCCATACGCGCGCTCGAGTCCGAGTTGACCCAGGTTAGACAGACCTTGAGCGATACTCAACTGAACGACCGTCTCGTGAGCTTTGAAGTATGCCCCA GGCTGATAGCTGAAGTAGTGGGTGGCTGGACCGGGATTCCTGTATCGCGTCTGGCTCAGGAGCACAGTTCGGCAATCAACAGCTTTTCCTCAGAACTGCG TATGCGCATCCGGGGTCAGGAACCGGCGATGCTGACCATTGAAAAGGCAGTCCGGGCATCGGCTGCGGATTTGAATGCACCCGGTGCCCCAACAGGCGTA TTTCTTCTGGTCGGACCCAGCGGAGTGGGCAAGACGGAAACAGCCATTGTTCTGGCTGACCTGTTATATGGCGGCGAGCGTTTTCTCACAACGATCAATA TGTCCGAATTTCAGGAGAAGCATACCGTTTCCCGATTGATCGGCGCTCCTCCGGGCTATGTTGGTTATGGCGAAGGGGGCATGTTGACCGATGCCGTTCG ATGCAAACCGTATTCAGTCATTCTGCTCGATGAGGTGGAGAAGGCTCATCCGGATGTACTGAATCTGTTCTACCAGATTTTCGATAAAGGCACGGCCAAC GACGGAGAGGGCCGGGAAATCGATTTCCGCAACACACTCATTCTGATGACCTCCAACCTAGGTGCCGATCTGATCCATGCAAGCTGCCACGAGGGCAGAC GACCTGATGTCAAAGAACTGAAAACCAGGCTGAAACCGATACTGAGTGCGCATTTCAAACCGGCATTGCTGGCTAGAATGCGGGTTGTGCCTTATTACCC GATCATGGGGTCGGCGCTGCGTGAACTGGTCGAGCTAAAACTGGTTCGTCTTGGCGAGAGATTTCAATCCCGTGGCCTGACCTTCAGCCATTCGCATGAT CTGGTTTGTCATCTGCTTGAACAGTGTACGCAAGACGACAGCGGCGCCCGGCTGATCGATCAGTTACTGGAGTCCAGTCTGACCCCTTTGATAGCAGACC ATTTACTTGGCGCCATGAGCCGTGGTGACAAAGTCGTCAGGGTTCACGCAACACTGGACAGTTCAGGTGGTGTTGTCTGTGAGTTCGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGTGGTCTCGTCCTTTCATTCGTTACACGACCCATTAGGCTATGCGCAAACATTGGTTTCGCGATACTCGGCGCTCTCCCGATCAGCCGACAGCCAGTCG TTGCAGCATGATTTTGTACTATCTGCTGCCGAGCTCAGTAACTGTCAGGCAAGCCAGTTGTTTCTGCTCGACGCGAGCCATAAGCGCCTCTGCCTTGCTG CGCAAGCCATCGACAGCGTCATTCAGCCTGACCAGGAAACGACTTCACTTAAAGACTATCGGGACGAGCCTTTACTGCAGTTCTGTCTGCTTCAGAACCG GGTTGTCAGCGTGCCGAAAATCAGCAGCAGTCTTTACGGAACCAGCTTTTTACCGGTACAGGCGCAAGAGTGGAAATCACTGCTGTGCGTTCCGCTGCAC AATCGTGAGCGGACAACTGTCGGGGTGCTGGTCTGTGTGAGCAGGCATTCTGGAGAGTTGGAAGGCTACGCAGAATCCCTGGGCGCGCTAGGGTCGTTTG
|
|
| Amino Acid Sequence |
>ATPase AAA
MIDVDLQQLVNALDAPTRGELEGTAERCVSRGSSKILVEDLLLALLERPDGMLARALLDAEVGADELAGFLHPPVEQSATRSPAFSAELVQWLQDALLIA NLDLGQSLIDQSALILALLRNPLRYADRPYQPLLAKINIERFRDHALAEQMPEVTKPSVNQCDSLLERFTHNLTQQAREGLLDPVLCRDDCLRQMIDILS RRRKNNPIVVGEAGVGKTAVVEGLALKIVHGEVPDLLENIELLSLDMGLLQAGASIKGEFERRLKGVIDEVKSSSRPVILFIDEAHTLIGAGAQAGGSDA ANLLKPALARGELRTIAATTWAEYRQYFEKDPALARRFQPVRVLEPTVEQAITILRGLAPLYERTHGVYLRDDAVVAAARLSARYITERQLPDKAIDLLD TACARARIGLVAVPERLEYLRSEMARQQRQSEAVLRDANAGLSVDDKALETLASDLSRLQSEAVALECRWADQRAVVERLLELRKQLAERAAQSAEASGC ESIRALESELTQVRQTLSDTQLNDRLVSFEVCPRLIAEVVGGWTGIPVSRLAQEHSSAINSFSSELRMRIRGQEPAMLTIEKAVRASAADLNAPGAPTGV FLLVGPSGVGKTETAIVLADLLYGGERFLTTINMSEFQEKHTVSRLIGAPPGYVGYGEGGMLTDAVRCKPYSVILLDEVEKAHPDVLNLFYQIFDKGTAN DGEGREIDFRNTLILMTSNLGADLIHASCHEGRRPDVKELKTRLKPILSAHFKPALLARMRVVPYYPIMGSALRELVELKLVRLGERFQSRGLTFSHSHD LVCHLLEQCTQDDSGARLIDQLLESSLTPLIADHLLGAMSRGDKVVRVHATLDSSGGVVCEFE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|