Pseudomonas syringae DSM 10604, PSSR_RS0109655
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCTATCAGGAAGGCCATGAAGATGAAGTAATAATCCAGGCATTCAGCCATAACATCATTAAACCCTGTGATCCTCAGTCAGGGCAGACTACTGGCCAAC GAATTCATGGTCCTGCGTGTGTCACGAAAACTTTCGACAAGACCTCGCCATTGCTTCTGGAGGCTCTTTGCTCAGGCTCAAAGCTAAGCGAAGTCGAAAT CAAGTGGTACCGGACGTCTATCGATGGCAAGCAGGAACACTATTACACCACCACCCTGGAGGATGCGGTCATCGTCAACATCAAGTCCTACATGCACAAC TGCCAGGATCCGACGAACTCGCACTTTGGACACCTGGAGGACGTTCAATTCAGCTATCGCAAAATAACCTGGGACCACGTAAAGGCCACTACTACCGGGT CTGATGACTGGAGAAGTCCGAAGTCGGCATAACTCCGCTGCCCCGGCGGTTCGACAGGATCGGCGGGGTTTTCATAAACCGGCTAGGCACGGTGGTCCAT
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| DNA Sequence for Gene |
>PSSR_RS0109655
ATGACGCTGAACCCCACTGATAGACCTTATTTCAGCCTGAGCATCGACGGCCCTGAGCATGATTTTCAAATCCTTTCATTTACCGGCCATGAAGCGATCA ATCAGCCCTTCTGTTTCAAGCTTGAGCTGGTCAGCGAGCGCGCTTCGCTCAATCTCGAAAGCCTGCTGAATTGCCCCGCATTTCTGCAGTACACATCCAG GGGCAACGGCATTCATGGAGTGATCGATCAGGTTTCCCAAGGCGATTCCGGCAGGCGTCTTACGCACTACTCAGTCACCTTGCGACCGAATCTGGCAAGG CTCAGGCATCGTACCAATCAGCGTATTTTCCAGAATCGAACAGTAAAGGAGATTATTGAGCAGGTACTGAAAGAACATCACCTGATAGGCGACGCCTACA GCTTCCAGCTCGGTATGACTTACCCCGAACGCGAATACTGCGTGCAGTATGGCGAGTCCGACCTGCACTTCATCCAGCGGCTTTGCGAAGAGGAAGGCCT GCACTACCACTTCAAACACAGCCACACAGCACATCAACTGGTGTTTGGTGATGACCAGACCGTATTTCCTAAACTAAATCCGGTTATCTATAAGCCGGAC AGTGGCCTGGTACCGGGTGATTCGGTCATCAAGCGCTTCAGGTTGCGCCTGGAAACACGTACAAACAGCGTTACTCATCGCGATTACCACTTTGAAAAAC CACTTCTGAAAATGGAAGGCTCGGCATATGACGACGCCCGGCCGGAGCTGGAGCACTACGAATACCCAGGCGGCTTCATTCATCGGGATCGAGGAGCGCA TCTGGCGAGCCGCGCACTTGAGCGCCATCGCCAGGATTACCGACTGGGCGATGGCCAAAGTGATCAACCCACCTTGGTCAGCGGCCATTTTCTACCTTTG CGCGAGCACCCCAACGAGGAATGGAACGACCTGTGGCTGTTGACCGAAGTTCGTCATGAGGGCCGCCAGCCGCAGGGGCTTGAGGAGTCCGCCCATGCAT TACAGAACAAGGGGGGCTTTCATCAGGGCTATCGCAATACCTTTCTCGCTACGCCGTGGCCATCCTCGTATCGCCCTCCCCGGCGTCATCCCAAGCCAAG AATATTCGGCAGCCAGACCGCTGTGGTCACCGGTCCGAAAGGTCAGGAAATACACTGCGACCGGCACGGCCGGGTCAAAGTGCAGTTTCATTGGGACCGC GAGGGACAGGCCAATGATCGCAGCAGTTGCTGGGTAAGGGTTTCGTCCGGTTGGGCCGGTCATCACTACGGCAGCATGGTCATCCCGCGAGTGGGTATGG AAGTACTGGTGACGTTCCTTGACGGCGACCCTGACCGTCCATTGGTCAGCGGCTGCCTGTATCACGCAGAGCACGTCCCACCCTACGATCTGCCTGCACA TCAGACGCGCAGTGTATTCAAGACCCTGAGCAGCCCCGGTGGCAATGGTTCCAACGAGCTGCGCATCGAAGACCGGGCCGGTCAGGAGCAGATCTACGTT CATGCCCAGCGCGACTGGGAGCAGAACATTGAGCATGAGCAGAAAATCCGGGTCGGTCATCATCGGCATGAGCGGATCGAAGGCAACAGCTACAGCGAGT TCAAGATCGAGGAACATCGGACTGTCGATGGCGACCGGCTGACCGAGGTAAAAGCGAGCGATCACGTCACGGTGGGCGGAACCCGGCACATCAAAGTGGG TGATGGATTACTGGCCCACGCCGGACAGGAAATCCACCTCAAAGCCGGTAACAAACTGATCATCGAGGCAGGGCTGGAAATCACGCTAAAAGCAGGCGGC TCCTTTATCAAGGTCGATGCCAGTGGCGTGACCGTGAACGGGTCTCAGATAAAGCTCAATTCGGGGGGCAGCCCCGGAAACGGCTCTGGAGCAAACCCGC TACTTCCGGGTAATGCAGAGCGGCCAGAAGCTGGCGAATCAGGTGACATGCTTATCTCCGCACAGCGACAGGCAATGATACGCAGCCCATTGTGTAGCCA ATGCTCGCAAGCAACCGAAGAACCGAAAAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATCAAGCCAATTATCTGTTGATTGACGGAGTGCTCAGACCTGACGCCGTAAAACAGCTATACCAGTGCGACGAACCTATCGAGATCGCTCCGCTTTATCT CGGCACACGGTGGGCGGAGATCATGGATTTAGGCCCGGTACTTGTGCGCGCGGTTCATCCCTCCGAACTCATAGCGCAGTGGCATCGACATCCTGAACAA CGTATCGACGCCTGCATTTTTTTCAGCAATGCGTCCTTGAAAATCGTCTCTGAACATTTGCAGCGTTTCCTGAGCCCCCTTGGTTATCTCGGTCATTCAA GTCTGCTGCGCTTCGCAGATCCGCTGGTGATGCACTATTGGCTATCGAGCTATGACCCTGAACATTTGAACTTGACGCTAGGCCCCATCGATCAACTCTG GGTTCAGTCACCCCTGCGCAGCTGGCAACAAAACCTCGATCCAGCGATCACGACATTTGTTAACGAGCGTGCGCAAAAAGTCTCTCGAGCGCATTTTCCT
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| Amino Acid Sequence |
>type IV secretion protein Rhs
MTLNPTDRPYFSLSIDGPEHDFQILSFTGHEAINQPFCFKLELVSERASLNLESLLNCPAFLQYTSRGNGIHGVIDQVSQGDSGRRLTHYSVTLRPNLAR LRHRTNQRIFQNRTVKEIIEQVLKEHHLIGDAYSFQLGMTYPEREYCVQYGESDLHFIQRLCEEEGLHYHFKHSHTAHQLVFGDDQTVFPKLNPVIYKPD SGLVPGDSVIKRFRLRLETRTNSVTHRDYHFEKPLLKMEGSAYDDARPELEHYEYPGGFIHRDRGAHLASRALERHRQDYRLGDGQSDQPTLVSGHFLPL REHPNEEWNDLWLLTEVRHEGRQPQGLEESAHALQNKGGFHQGYRNTFLATPWPSSYRPPRRHPKPRIFGSQTAVVTGPKGQEIHCDRHGRVKVQFHWDR EGQANDRSSCWVRVSSGWAGHHYGSMVIPRVGMEVLVTFLDGDPDRPLVSGCLYHAEHVPPYDLPAHQTRSVFKTLSSPGGNGSNELRIEDRAGQEQIYV HAQRDWEQNIEHEQKIRVGHHRHERIEGNSYSEFKIEEHRTVDGDRLTEVKASDHVTVGGTRHIKVGDGLLAHAGQEIHLKAGNKLIIEAGLEITLKAGG SFIKVDASGVTVNGSQIKLNSGGSPGNGSGANPLLPGNAERPEAGESGDMLISAQRQAMIRSPLCSQCSQATEEPKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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