Pseudomonas syringae DSM 10604, PSSR_RS0109405
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGAGCTTTTTCAGGAGTTGCTGGCTTGATCGAAACGTTTCCAGACATCAGGCAACAGGTTAAAAACATGCCGTTGGTGGCATGCCGCTTGATGACTGGT GCTGTCCGCTTGTAAACTACCGAGTCCGCTCGCCCATCCGGGCATCGCGCATCCGCATTTGCTACGAGGAATACCCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCAACCGGCGGCAAAGAACCAAAGCTGGCCTGGG AAAACGACAAGCCTACCGTTATGGCCCTGCGTGAAATCGCGGCTGGCGTAATGGATTACTCTGTAATCGCAGAAGCTGAAATCGTTGAAGATGAGCCATT GTTCGCAGCGTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCAGGTCGACGTAGTACGGCGCAGGGTAAAAGCCATTGGCAAGGGGTAGCGCC
|
|
| DNA Sequence for Gene |
>PSSR_RS0109405
TTGCCGAGCATAGACGCCCTCGCCGACAGACTGTCGGCCTACCTCGGCAAGGACCAGGTCAATCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ACGATGGCCAACGCCGTCGCAGCGGTGAAGCCTACGTCACCCATCCTCTTGCGGTGGCGAACATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCTGCGATGCTGCATGACGTCATCGAAGACACCGGGATTGCCAAGGAAGCGCTCAGCGCCCAATTTGGCGAGACTGTCGCGGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAATTTCGAGACCAAGGCCGAAGCCCAGGCGGAAAACTTCCAGAAAATGGCCATGGCCATGGCGCGCGATATTCGCGTCATCC TGGTCAAGCTCGCCGATCGCCTGCACAACATGCGCACGCTGGAAGTCCTGTCCGGCGAAAAGCGCCGGCGCATCGCCAAGGAAACCCTCGAAATCTATGC GCCCATCGCCAATCGGTTGGGCATGCACAGTGTGCGCATCGAATTCGAGGACCTGGGCTTCAAGGCGATGTACCCGATGCGCTCCTCGCGAATCAACCAG GCGGTCAAGCGCGCCAGGGGCAATCGCAAGGAACTGGTCAACAAGATCGAAGAATCCCTGAGTCATTGCCTGGCCGTCGATGGCATCGAAGGCGACGTCA GTGGTCGGCAGAAACATCTGTATGGCATCTACAAGAAGATGCGCGGCAAGCGTCGCGCCTTCAACGAGATCATGGATGTCTACGCGTTCCGCATCATCGT CGACAAGGTCGACACCTGCTATCGCGTGCTCGGCGCTGTACATAATTTGTACAAGCCACTGCCCGGTCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTATCAGTCCCTGCATACCACCTTGTTCGGTATGCATGGCGTGCCTATCGAGATCCAGATTCGCACCCGCGAAATGGAAGAAATGGCCAACAACG GCATCGCAGCGCACTGGCTATACAAATCCAGCGACGACGAGCAGCCCAAGGGCACTCATGCTCGAGCCCGACAGTGGGTCAAGGGCGTGCTGGAAATGCA GCAGCGTGCTGGCAACTCCCTGGAATTCATCGAAAGCGTCAAGATCGACCTGTTCCCGGACGAGGTCTACGTTTTCACGCCCAAAGGCCGAATCATGGAG CTGCCCAAAGGCTCCACAGCGGTGGATTTCGCCTACGCGGTACACACCGATGTCGGCAACAGCTGCATTGCCTGCCGGATCAACCGCCGACTGGCGCCGC TTTCCGAACCGCTGCAAAGTGGCTCGACCGTCGAGATTGTCAGCGCACCCGGCGCACGTCCGAATCCGGCCTGGCTGAACTTCGTCGTCACTGGCAAGGC GCGCACCCACATTCGTCACGCGCTCAAGCTGCAACGCCGCTCCGAGTCGATCAATCTGGGCGAGCGCCTGCTGAACAAGGTGCTCAACGGCTTTGAATGC AACCTCGACAAGATCGGTCAGGAGCGCATTCAACTGGTGCTCAACGAATATCGGGTCGAAGTGCTGGAAGACCTGCTCGAAGACATCGGCTTGGGTAATC GCATGGCTTATGTCGTTGCCCGCCGCCTGCTGGGCGAAGGCGATCAGCTGCCAAGCCCTGAAGGCCCGCTGGCGATTCGTGGCACCGAAGGTCTGGTGCT CAGCTACGCCAAATGCTGTACACCAATCCCGGGCGACCCGATTGTCGGCCACCTGTCTGCAGGCAAGGGCATGGTTGTACACCTGGACAACTGCCGCAAC ATCAGCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTGTCCTGGGCGAAGGACGTGACCGGCGAATTCAACGTCGAGCTGCGTGTCGAACTCGAGC ATCAGCGCGGCCTGATCGCGCTGTTGGCCAGCAGCGTCAACGCGGCGGACGGCAATATCGAAAAAATCAGCATGGACGAACGCGATGGTCGCATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGATCGCGTGCACCTGGCTCGTGTGATCAAGAAACTGCGCGCCCTGACCGGTGTCACACGCATCACCCGGATGCGC GCGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCATCCCATTATCAGGAGTTCTCATGACCAAGACTGTCATCACCAGCGATAAAGCCCCTGCGGCCATCGGCCCTTACTCACAGGCCATCAAAGCTGGCA ATACCGTCTACATGTCCGGACAGATCCCGTTGGACCCGAGCACCATGGAACTGGTCGAGGGCATCGAAGCCCAGATCACTCAGGTTTTCGAAAACCTCAA GTCGGTTGCCGAAGCAGCGGGCGGATCTTTCAAGGACATCGTCAAACTGAACATCTTTCTGACCGATCTGGGCCACTTCGCCAAGGTCAACGAGCTGATG AGCGCCTACTTCACTCAGCCTTATCCGGCCCGCGCAGCTATCGGCGTTGCGGCCTTGCCGCGTGGCGCCCAGGTTGAAATGGACGCGATTCTCGTCATCG AATAAATCCCCGACGGAGCGTGCCTTGCGCTCCGTTCTCCCTGAAGGAAGGAATCCGTTATGCGCTCCGCGCTCGCCATCTCGCTGCTCGCCGTCATTCT
|
|
| Amino Acid Sequence |
>RelA/SpoT protein
MPSIDALADRLSAYLGKDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHSVRIEFEDLGFKAMYPMRSSRINQ AVKRARGNRKELVNKIEESLSHCLAVDGIEGDVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSDDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESINLGERLLNKVLNGFEC NLDKIGQERIQLVLNEYRVEVLEDLLEDIGLGNRMAYVVARRLLGEGDQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVTRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|