Pseudomonas syringae DSM 10604, PSSR_RS0108725 (groEL)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTGCTCGCCCTTATGTATGGGTCACCGCAAGGTTTCTGGCCTGAAGGCCAGACCGTATTCTGCGGTTCGCGCGTCGAACCGTAACCGGCAAGTCCGGAT TTAAACCGGCCGGTGCACTCACCGGACGATCAAACAAACATAATCAGGAGATCGACAATGAAGCTTCGTCCTCTGCATGACCGCGTCGTCATCCGTCGCA GTGAAGAAGAAACGAAAACTGCCGGCGGTATCGTTCTGCCAGGTTCGGCTGCTGAAAAGCCTAACCGCGGCGAGATCGTTGCTGTGGGTACCGGCCGCGT GCTGGACAACGGCGAAGTACGTGCGCTGGCTGTGAAAGTGGGTGACAAGGTTGTGTTCGGCCCTTATTCCGGCAGCAACACAGTGAAAGTAGACGGCGAA GACCTGCTGGTGATGAGCGAGAACGAGATTCTTGCTGTCGTCGAAGGCTGAGTGCTCCCGCTGACTTCCGTTACTACTAAGTATTCAAGGAATAATGATC
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| DNA Sequence for Gene |
>PSSR_RS0108725
|groEL
ATGGCTGCTAAAGAAGTTAAATTCGGCGATTCTGGCCGCAAAAAAATGCTCGCCGGTGTAAACGTCCTGGCTGACGCAGTTAAAGCGACCCTGGGCCCTA AAGGCCGCAACGTTATCATCGAGAAAAGCTTTGGCGCTCCGCTGATCACCAAAGACGGTGTTTCGGTTGCCAAGGAAATCGAGCTTAAAGACCGTTTCGA AAACATGGGCGCGCAGCTGGTCAAAGACGTTGCTTCCCGTGCTAACGATGATGCAGGCGACGGTACCACTACCGCTACCGTTCTGGCTCAGGCCATCGTC AACGAAGGCCTGAAGGCTGTCGCTGCCGGCATGAACCCGATGGACCTCAAGCGCGGCATCGACAAGGCGACCATCGCCATTGTTGCCGAGCTGAAGAAGC TGTCCAAGCCATGCACCGACACCAAGGCAATCGCCCAGGTCGGCACCATCTCGGCCAACTCTGATCACTCCATCGGCGACATCATTGCCGAAGCCATGGA AAAAGTGACCAAAGACGGCGTTATCACCGTTGAAGAAGGTTCTGGCCTGGAAAACGAGCTGTCTGTTGTAGAAGGCATGCAGTTTGACCGTGGTTACCTG TCCCCGTACTTCATCAACAAGCCGGACACCATGGTTGCCGAGCTGGACAGCCCGCTGCTGTTGCTGGTCGACAAGAAGATCTCCAACATTCGCGAAATGC TGCCGGTTCTGGAAGCAGTCGCCAAGGCTGGCCGTCCTCTGCTGATCGTTGCCGAAGACGTTGAAGGCGAAGCGCTGGCGACTCTGGTGGTCAACAACAT GCGCGGTATCGTGAAAGTTGCAGCCGTCAAGGCTCCAGGTTTCGGCGATCGTCGCAAGGCCATGCTGCAGGACATCGCTGTTCTGACTGGCGGTACCGTT ATCTCCGAAGAGATCGGCCTGAGCCTGGAAACCACTACCCTGGAACACCTGGGTAATGCCAAGCGCGTCATCCTGAACAAAGAAAACACTACCATCATCG ATGGTGCTGGCGTGAAAACCGATATCGACTCACGTATCTCCCAGATCCGTCAGCAAATCGGCGACACCAGCTCGGACTACGACAAAGAAAAACTGCAAGA GCGTCTGGCCAAGCTGTCTGGCGGCGTTGCAGTGATCAAGGTCGGTGCCGGTTCCGAAGTCGAGATGAAAGAGAAGAAAGCCCGCGTTGAAGACGCCCTG CACGCAACCCGCGCAGCCGTTGAAGAAGGCGTGGTACCTGGCGGTGGCGTGGCACTGGTTCGCTCCCTGCAGGCTATCGAAGGTCTGAAAGGCGACAACG CTGATCAGGACGTCGGTATCGCTCTGCTGCGTCGTGCAGTCGAAGCGCCGCTGCGCCAGATCGTTGCCAACTCCGGTGACGAGCCAAGCGTTGTTGTCGA CAAGGTCAAGCAGGGTTCGGGTAACTACGGTTACAACGCTGCTTCCGGCGAATACGGCGACATGATCGAAATGGGTATCCTTGACCCGGCCAAAGTGACT CGCTCTGCTCTGCAGGCGGCGTCCTCCATCGCCAGCTTGATGATCACCACCGAAGCGATGATCGCTGACGTGCCTGACGACAAGCCAGCAGGCGGCGGCA TGCCGGACATGGGCGGCATGGGTGGTATGGGCGGCATGATGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCAGCTTTACCCCCAGCGTTACACCCATAAAAAACCCCGCCTTGTGCGGGGTTTTTTTATGGTCTTTGTGTCCGATCAATCAATGCGTCGGTTGTACTT TGCTGTTATCGAGACCCTTGGGTTCGGGGCGGTAAAGCACGAAGTAATAAACCCCCAGACAGATCAGCCAGCAGAACACTGCGGTCCAGATGTTATGGGA AAAGAAGTGCGCACCTTGCAGCATCCGCCCGACAGAGAACACCGTTCCAAGGCCGAACGCCAGAGCCAGGCCCATTTTTGCCATCCGTGGACGACGGTCG CGAAAAGCGAAGAACAGCGAGAACAGGGTAAAGCCGGTCGCCGCATGACCGCCCGGCCAGCAGCGTCCCGGTTTATCGGTCGCAGGGCGTGGGCTCAACA GTTCGCTGTAGGTTTCCTGACCACCGAATTCTTTCAGGCTCCAGGGGCACTGCACTGACGTCACCACTTTCACCGGGGTAACGAAGGCGGTTGAAAGCGC
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| Amino Acid Sequence |
>molecular chaperone GroEL
MAAKEVKFGDSGRKKMLAGVNVLADAVKATLGPKGRNVIIEKSFGAPLITKDGVSVAKEIELKDRFENMGAQLVKDVASRANDDAGDGTTTATVLAQAIV NEGLKAVAAGMNPMDLKRGIDKATIAIVAELKKLSKPCTDTKAIAQVGTISANSDHSIGDIIAEAMEKVTKDGVITVEEGSGLENELSVVEGMQFDRGYL SPYFINKPDTMVAELDSPLLLLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGTV ISEEIGLSLETTTLEHLGNAKRVILNKENTTIIDGAGVKTDIDSRISQIRQQIGDTSSDYDKEKLQERLAKLSGGVAVIKVGAGSEVEMKEKKARVEDAL HATRAAVEEGVVPGGGVALVRSLQAIEGLKGDNADQDVGIALLRRAVEAPLRQIVANSGDEPSVVVDKVKQGSGNYGYNAASGEYGDMIEMGILDPAKVT RSALQAASSIASLMITTEAMIADVPDDKPAGGGMPDMGGMGGMGGMM
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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