Pseudomonas syringae DSM 10604, PSSR_RS0108370
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCAAGCTGGCAGTCTTCGACGTCGATGGCGTACTGACCGATGGCCGCCTTTACTTCATGGAAGATGGCAGCGAGATCAAGACATTCAATACTCTCGACG GCCAAGGCATTAAAATGCTGATAGCCTCGGGGGTCACCACCGCGATCATCAGTGGCCGCAAGACCGCGATAGTCGAGCGCCGGGCAAAGAGCCTGGGCAT TGAACACCTGTTTCAGGGACGTGAAGACAAACTGGTGGTACTGGACAAGTTGCTGGCAGAACTCAACCTGAGTTACGAACAGGTCGCCTATCTGGGTGAT GATCTGCCAGACTTGCCCGTCATCAGACGCGTCGGTCTGGGCATGGCAGTGGCCAATGCTGCCGGCTTTGTACGCGAGCACGCACACGGGATAACCAGGG CGCGAGGCGGCGAAGGTGCAGCGCGCGAATTCTGCGAACTGATTCTGAGTGCGCAAGGCAACCTTGAAGCGGCTCACTCCGCCTATTTATAGAAGCCATT
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| DNA Sequence for Gene |
>PSSR_RS0108370
ATGTTCACTAAAAAAATTCGCAAGTTCCTGCTTCTCGGGGTACTGGCGCTGCTGCTGGCAGCGGTCGGTTACTGGAACATCAGCCCGGAAAGCTTCATGG ACCAGCCTGATGCGTCGCTTGACGACACGGCGATCGACTACTATGCGATCAATACTCGCAGCGTGCAGTACCTGCCAGACGGCACACTTCAGTACGACAT GACCTCCGACAAGGTCGAGCATGTGAAGGCCACAGATGTGAGCCTGCTGACGACACCCAATCTGAACATGTACCGCGGCGGAGCATTTCCGTGGCACGTG CAAAGCAAACGAGGTGAAGTTTCGTCCGACGGCGATCAGGTCGAGCTGATGGATTCCGTTCGTGTTGAACGCACCGATGAAAAACAGCGCACGACCATTA TTACCAGCAGCCGCATGACCGTATTTCCTCAGAAGGAATATGCGCAGACCGACCAAGACGTTAGAATCGACGGCGCGGGCGGTGTCACTACGACCAAGGG AATGAAAGCGTATTTGAAAGACAGCAGGATGGACCTGCTGTCCAACGTAAGAGGACAGTATGAGGCTCGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACTCTTCCTTTATTGCTCGGCCTGGGCGCAGCACTGGGAAGCGCGAGCGCCTGGTCCCTGCCAACCGACCGAGATCAGCCTATCCACATCCAGTCTGAC GATGCTCAGCTCGATGACAAGAAAGGCGTGGCGACTTACAAGGGCAATGTCATCATCACTCAGGGCTCGATGAAAATCACGGGCAACACCGTGACAATCA CGCGTAATGCCCAGGGCGAAGTCGACGTCTTCACCTCCGTCGGCAACCTGGCTTACTACGAGCAGAAGCCTGCCGTAGACAAACCGATCGTGCAGGCCTA TGCCGTCACCATCCAGTATTACGCTGGCCAGGACCGTATCGTCCTGATCGACAAGGCCAAGGTCATCAATGATGGCAACACCTCGGAAGGCGAGAAAATC GTCTACGACACGGTTAGACAGGTCGTCACCGCTGGTCGGGCCAATGGCGGCGCCAAGGTGACTACACCACGTCCGCGTATCGACATGGTCATCCAGCCGA
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| Amino Acid Sequence |
>lipopolysaccharide ABC transporter permease
MFTKKIRKFLLLGVLALLLAAVGYWNISPESFMDQPDASLDDTAIDYYAINTRSVQYLPDGTLQYDMTSDKVEHVKATDVSLLTTPNLNMYRGGAFPWHV QSKRGEVSSDGDQVELMDSVRVERTDEKQRTTIITSSRMTVFPQKEYAQTDQDVRIDGAGGVTTTKGMKAYLKDSRMDLLSNVRGQYEAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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