Pseudomonas syringae DSM 10604, PSSR_RS0107725
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGGTGATGCCGGACGAGGGTTTGCCGTGGTGGCCGACGAAGTACAACGGCTGGCCGAGCGTTCGTCCTCTGCGACCAAGCAGATCGAAACGCTGGTCC GGGCCATCCAGAACGACACCAACGAGGCGGTTATCTCCATGGAGCAGACCACCAGCGAAGTGGTACGCGGCGCACGCCTGGCGCAGGACGCCGGGGTGGC GCTGGGGGAAATCGAAGGGGTGTCCAGGGTGCTGGCCGAACTGATCGAAAGTATCACCGATGCCGCCCACCAACAGGCCGAGTCTGCCGGGCAGATTTCG CAGATCATGACCGTCATTCAACAGACCACTTCGCAGACCACCTCGGGCACCTCGGCCACTGCTGAAAGCATTGGCAACCTGGCGAAAATGGCCAGCGAAA TGCGGCGCTCGGTATCGGGCTTTGCCCTGCCGTCATCGAAGAAAGCCGGATGATGTACCGCACATGAACAACCTTGATTGGGTAACGGACGGTACTCGTC
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| DNA Sequence for Gene |
>PSSR_RS0107725
ATGGCTGATCGTCACGATTACGTTGCTCTTGAGTGGCTGAAGGGCGAGATCGCCGAAACGTTGCGCCAGGCCCGTCAGGCGCTGGACCTGTTCATCGAAG ACCCGGCCAATGCTGCTGCGATGGCCGAGTGCCTGAAACTGGTGCATCAGGTTCACGGCAGTCTGCAGATGATCGAGTTCTACGGCGCCGCGTTGCTGGC CGAGGAAATCGAGCAACTGGCGCTGGCGGTCCAGCAGAACCGTGTCAGCCATCCGGTCGAGTCCGAGCAGCTGTTGATCCAGGCCATGAGTCAGTTGCCA GTTTACCTGGAACGCATTCATTCCGCGCGCCGCGATCTGCCGCTGGTGGTCTTGCCACTGCTCAATGACCTGCGCAGCGCGCGGGGCGAAAGTCTGCTCT CGGAAACCAGCCTGTTCGCCCCGCAGCTGGTCGTCGTGCCGCCGCTTGATGAGCAGGAGCTGGCGCGGCGCAATACCCCGGAATTGCCCAACCTGCTGCG CAAGCTGCGCCAGACGCTGCAGGCGGCGCTGGCCGGCCTGATGCGCGAGCAGGGCGTGCAGACCCAGCTCGGTTACATGGCCAAGGTGTTTGCCCGGCTT GAGCAGTTGTGCGAAGACGCGCCGCTCGGTGCGCTCTGGCGGATCGCCTCGGCACTGGTCGAAACCATGCTCAACGGCAACTTCACCAACAGTCCGGCGC TGCGCAGTCTGTTGAAGGACGCCGACAAGGAACTCAAGCGTCTGGCCGAGCAGGGCGTCATCGGCATCAATCAGCCCGCCCCCGAAGAGCTGTTGAAAAG CCTACTGTTCTACATCGCCAAGTCCGACAGCCTGGCGCCGAAGATGCTCGACCTAAAGGATCAGTACGCGCTGGCCGATGCCTTGCCCGGCAACGACGTG GTCAACGAAGAGCGCGCCCGCATGGCCGGTCCGGACCGAGACGCCATGCGTTCGGTGATCGTGGCCTTGTGCGAAGGGCTGGTCAGGGTCAAGGAACGGC TCGACGTGTTCGTGCGCGGCGACCGTCAGCATGTCAGCGAGCTGAACGCGTTGCTGCCGCCGTTGCGGCAGATTGCCGATACCCTGGCGGTGCTGGGTTT CGGCCAGCCGCGCAAGGTGATCATTGATCAGTTGTCTGTGGTCCTTGGTCTGGCGCAGGGGCAGCGCGAACCCAGCGACGCGGCGCTGATGGATGTCGCG GGTGCCTTGCTCTACGTCGAATCGACCCTTGCCGGCATGGCCGGGAGCCACGAGCAGGTCAGCCGCGAAGAAAGCCGCCTGCCGACCACCGACCTGACGC AGATTCATCAACTGGTGATTCGCGAAGCCCGCACCGTGTTGCAGCAGGCCAAGGATGTGATCCTCGATTACATCGACGGCGAGTGGGACCGGCAGCGGCT CGATCCGCTGTGCGCGCTGATCGTGCAGGTTCGTGGTGCGCTGGCCATGATCCCGCTGGCCCGTGCGGCCAGCCTGCTGGCCGCCTGCAACGAATACATT CAGGAACACCTGCTGGTGGACGAAACCCGTCCCACCTGGGTTCAGCTCGATTGCCTGGCCGACACCATCACCGGTATCGAGTATTACCTGGAACGCATGC TCGAAGACCATCAGGCGCCGGGCGACCAAGTGCTGGATATGGCCCAGCAAAGCCTGGCACGGCTGGGCTATACGCCTGCTGCGGACACCCTCGAAGTGCC GTTGCTCGAAGAGATCATCACTCAGGACGAGTTGCTGGAACTGGATGACCGCAAGGCGCTGGTCAGCCCCACGCAAACCATTGCCCAGGTCCTCGCCAGT CCGGTCTCGGCCGTCAACCCTCCCGCCCGTAACGTACCCACCAGCCTGTTGCCGCCCTCCGCCGGGGAAGAGGCGGTGGACGACGAGTTGCGCGATGTGT TTCTCGAAGAGGCCGACGAGGTGCTCGACGCGCTGCGCGAGTACCTGCCGCGCTGGTTCACCTCGCTCGGCCGCGACGGCCACTGGGACAGCACGGCGCT GACCGAAGTGCGTCGTGCGTTTCATACCCTCAAGGGCAGCGGCCGTATGGTGCGTGCGCTGATCCTCAGCGAACTGGCCTGGTCGGTGGAAAACCTGCTC AACCGGGTGCTGGAAGGCGATGTGCTGCCGGGCATCGAAGTGCAACAACTGATGAGCGAAGTGCAGGCGCTTCTGCCGTCGGTCATCCGCGATTTTGCCG AAGATGCGCAGCGCCAGCGCGACGATGTCGACCTGTTGGCGGCTCGCGCCCATGCGTTGGCCAATGGGCTGGAGCCACCGACGCTGCCGGCCGTGGATGA TCCCGCGCCAGGCAAACCTGTTGCCGACGAACCGCTCGATCCACAGTTGCTGGAGATTTTCCGTCAGGAAGCGCTCGGCCATCTGAATACCCTCGGCCGC TTCCTCGACAATGCCGAACAATCAGCGTCGCCGGCGATCAGCGACGCGGTGCTGCGTGCGTTGCATACGCTCAAGGGCAGCGCGCACATGGCCGGGGTGC TGCCGATTGCCGAACTGGCCAGCCCGCTCGACCAGTTAGTGCGTGAATACAAGGCCAACCTGATCGATATCGGTTCACCGGAGCTCGTCCTGCTGCGCAG CGCCGAACCGTTGCTGCACAAGGGCCTCGAACAACTGGACAGCACGCCGCTGGCCGATATTCCGGGCGCCGCGCCGCTGATCGAGGCTGCCCTGGCGATG CTCAACGACCGCCTCACCGTGGTGCTGCGTGAGTCGGACAGCGGCCTGCGTATCAAGCGCAACCCCACGCTGCTTGCCAGTTTTCTGGCCGAAGGCATGG ACATCGTGCTGGATGCGGAAAACCTGCTGCGGGGCTGGCGGCAGCACCCCGGCGAACGCCAGGAACTGAGCGCGCTGCTCGACGAGCTGACCACCCTCGG TCATGGCGCGCATCTGGCCGACCTGCCGCAGGTCGATGAGCTGTGCGAGGCCTTGCTCGACCTCTACGGCGCGGTCGAGGAAAGCAGTCTGGCAGTCAGC GAGCGCTTTTTCGATGTGGCAGAAAATGCTCACGAAGCGCTTATCAACATGCTTGATCAGGTGGCCGCTGGTCAGGATGTCGAGCCACGTCCCGAATGCG TGCGTGCCTTGAACCAGTTGCTGGATCAGGCGCTTGACCCTTCGGCGACCGGGCTGGTCAAGAGCGACGGCCACCGCACCTTGAGCGTTACCGAGCTCAA CGCCGCCACCGCGCAGCTGGCCAGCGAGGCCGGGCACACTGAGACTGAGGTTGCCGGGCCGGACGACGAAATCGTCGAGATATTTCTGGAAGAGGCCGTC GATATCCTCGACAGCGCCGGTCAAGCCTTGCAGCGTTGGCTGGCCGATCCGGAAAACCCCGCGCCGCTGGCCTCGCTGCAGCGCGACCTGCACACCCTCA AGGGCGGTGCGCGGATGGCTGAGGTGGCCGAGGTGGGCGATCTGGCCCACGAACTGGAAAACCTCTACGAAGGCTTGATCGACCGGCGCTTCAACCATTC GCCGACGCTGGCCGAGCTGCTGCACGAGAGCCACGACCATCTGGCGATTCTGCTCGAGCAACTGTATCGGCAGGAGGCGCTCAGCGACCCTTCGGCCTTG ATCGAGGCGCTGCGCAGCTGCCGCACGCTCGAGAGCGCCGGGCCTGAGGCGCAGGCCTCGCCTGCCGCCAGTGAAGATCCTCCAGAGCATGACACCGAGC TGCGTGAAGTCTTCCTCGAGGAAGGTTTCGACATCATGGAAAGCTCGGGCGCGGCATTGGCGCGCTGGCAGGCCGATCCGCACAACATGCTGGAAGTCGA AAACCTGCTGCGCGACCTGCACACCCTCAAGGGCGGCGCGCGGATGGTGGAAATTGCTCCGATAGGCGACCTCGCCCACGAGCTGGAGACGCTTTACGAG GGGCTTTCCGCCGGCAGCCTGCAGCCCGCGCCGTTGATGATGGGGCTGTTGCAGAGCGGCCAGGATGTGCTGGCCGACATGCTTGATGCCGTGCGCAGTG ACAAGCCGCTGCCTGACGCGACCTTGCTGATTGAGAGCATTCGCAGACTGGCCACCGACGAGCCGTCGGGCGCAGTGCTGGCTGCGCAGGGCCTGGAGAT CCATCCGGAGTCGGTGGTCGCCGTGGCCCCGGTCGCCGAGGGCGAGGTCGAGCGCAGCGGCCCGGAAATGGTCAAGGTGCCTGCCGAGCAACTGGAAGAC CTGGTCAACCTGGCCGGCGAAACCTCCATCTTCCGTGGACGTATTGAACAGCAGATTATTGATTCACAGATCGCCCTGGTAGAGATGGAAACCACCATCG AGCGGATGCGCGATCAGTTGCGTCGTCTTGATATGGAAACCCAGGGGCGCATTCTCAGCCGTGAGCAGGTTCAGGCCGAGCGGCTGGGCTATGAAGAGTT CGACCCGCTGGAAATGGACCGCCATTCCCAGTTGCAGCAGTTGTCGCGCGCTTTGTTCGAATCGGCGTCCGACCTGATGGACCTCAAGGAAACCCTCGGT GCGCGCGCCCGCGACGCGGAAACGCTGCTGTCGCAACAGGCCAGGGTCAACACCCAGCTTCAGGAAGGCCTGATGCGTACGCGCATGGTGCCGTTCGAAC GATTGGTGCCGCGCCTGCGTCGCGTGGTGCGCCAGGTGGCCTCGGAACTGCACAAGAAAGTCCATTTCGAAGTGGGCAACGCCGACGGTGAAATGGACCG CAACGTGCTGGAACGAATGGTCGCGCCACTGGAGCACATGCTGCGCAATGCCGTCGATCACGGGCTTGAAAGCACCGAAAAACGCATCGCTGCCGGCAAG CCGGAACAGGGCCATATCAGTCTGGAATTGATGTACGAAGGCGGCGATATGGTCATCGAACTGAGCGATGACGGCTCGGGCGTTGACCTCGCAGCGGTAC GCCGCAAGGCCATCAAGCGCGGCATGATCCATCCGGATGCCGATCTGTCCGACCATGAAGTGCTGCCGTTCATCCTGCAGGCGGGTTTTTCCACCAGCGA GATCATCACCCAGATTTCCGGCCGTGGCGTGGGCATGGATGTGGTGCACGCCGAGGTCAAGCAACTGGGCGGTTCGATGGTCATCGACTCGGTACCGGGC CAGGGCACGCGCTTCCGTATTCGACTGCCGATTTCGGTGTCGGTCAACCGGGCGTTGATGGTGACGTGCGGCGAAGAACAGTATGCGGTGCCGCTCAATA CCGTCGATGGCATCGTGCGCGTCATGGCCAATGAACTGGACGGCTATTACCAGACCACCCCGCCGCGCTATCAATATGGTGGGCGCAGTTACGAGTTGCG CTATCTGGGCGAGTTGCTGGGCAGCAGTCCGCCCCGGCTGGCCGGGCAATTGCAGCCGCTGCCGGTGCTGCTGGTGCATCTGCAGGATCAGTGGGTGGCG GTGCAGGTCGATGCGCTGGCAGGCTCGCGCGAGATCGTGGTCAAGAGCCTCGGCCCGCAGTTCTCCAGGGTGCAGGGCATTTCCGGTGCGACCATCCTGG GTGACGGGCAAGTGGTGCTGATTCTTGATCTGATGGCGAAGATTCGTACCTTGCAGGGCTTGCCTTTAAGAGGAGGCATGGCGCCTGCCTACCACGAAGC CGAGCACGCCAGACCGCTGTTGGTGATGGTAGTGGACGATTCGGTGACGGTGCGCAAAGTTACCAGCCGCTTGCTGGAACGCCACGGCATGCACGTGCTG ACCGCCAAGGACGGTGTCGATGCCATGACCCTGTTGCAGGAGCACACGCCTGACATCATGCTGCTCGATATCGAAATGCCGCGCATGGACGGCTTTGAAG TCGCCAGCCAGATCCGCCAGGACGAACAGCTCAAGGAATTGCCTATCATCATGATCACCTCCCGCTCGGGCCAGAAGCATCGCGATCGGGCGATGGCGGT GGGCGTCAACGAGTACCTGAGCAAGCCGTATCAGGAAACCGTATTGCTGGAGAGCATCGCTTACTGGAGCCCGGCACATGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGCACGTTTCAGACAAGCCGTCTGACCAGCCTGACCGGCTTGCTGGTGCCGTTGAGTGACCGGCATCTGCTGCTGCCCAATGTCGCGGTCGCCGAGTTG ATCGATTATCAGGATTGCAGCGCAGAGCCGGATGCCCCTGAGTGGTACCTCGGGCCGATCAGCTGGCGCGAACTGACCTTGCCACTGCTCAGCTTCGAAG CTGCCTGCGGAGGCCGCACCCGCGTTGGCGGTCGAGCCCGGATCGTGGTGCTCAACGCGCTGGGCGGACGCAACGATGTCAGATTCATCGCCCTGCTGAC TCAGGGCATCCCGCGCTCGTGCAAGGTCGACAGCCAGTTGAGCTACGTCGACGTCCCGCTGGCCGAACTGGAACTGGCCGCCGTACAGATCGGCGAAACC GTAGCCCGCATTCCCGACCTCGAAGGGCTGGAACAATGGTTGGTGGATGCAGGGCTGTCATAGTTAAAGAGGACGCGGAGCGTCCAGAACGGCATGCGAC
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| Amino Acid Sequence |
>histidine kinase
MADRHDYVALEWLKGEIAETLRQARQALDLFIEDPANAAAMAECLKLVHQVHGSLQMIEFYGAALLAEEIEQLALAVQQNRVSHPVESEQLLIQAMSQLP VYLERIHSARRDLPLVVLPLLNDLRSARGESLLSETSLFAPQLVVVPPLDEQELARRNTPELPNLLRKLRQTLQAALAGLMREQGVQTQLGYMAKVFARL EQLCEDAPLGALWRIASALVETMLNGNFTNSPALRSLLKDADKELKRLAEQGVIGINQPAPEELLKSLLFYIAKSDSLAPKMLDLKDQYALADALPGNDV VNEERARMAGPDRDAMRSVIVALCEGLVRVKERLDVFVRGDRQHVSELNALLPPLRQIADTLAVLGFGQPRKVIIDQLSVVLGLAQGQREPSDAALMDVA GALLYVESTLAGMAGSHEQVSREESRLPTTDLTQIHQLVIREARTVLQQAKDVILDYIDGEWDRQRLDPLCALIVQVRGALAMIPLARAASLLAACNEYI QEHLLVDETRPTWVQLDCLADTITGIEYYLERMLEDHQAPGDQVLDMAQQSLARLGYTPAADTLEVPLLEEIITQDELLELDDRKALVSPTQTIAQVLAS PVSAVNPPARNVPTSLLPPSAGEEAVDDELRDVFLEEADEVLDALREYLPRWFTSLGRDGHWDSTALTEVRRAFHTLKGSGRMVRALILSELAWSVENLL NRVLEGDVLPGIEVQQLMSEVQALLPSVIRDFAEDAQRQRDDVDLLAARAHALANGLEPPTLPAVDDPAPGKPVADEPLDPQLLEIFRQEALGHLNTLGR FLDNAEQSASPAISDAVLRALHTLKGSAHMAGVLPIAELASPLDQLVREYKANLIDIGSPELVLLRSAEPLLHKGLEQLDSTPLADIPGAAPLIEAALAM LNDRLTVVLRESDSGLRIKRNPTLLASFLAEGMDIVLDAENLLRGWRQHPGERQELSALLDELTTLGHGAHLADLPQVDELCEALLDLYGAVEESSLAVS ERFFDVAENAHEALINMLDQVAAGQDVEPRPECVRALNQLLDQALDPSATGLVKSDGHRTLSVTELNAATAQLASEAGHTETEVAGPDDEIVEIFLEEAV DILDSAGQALQRWLADPENPAPLASLQRDLHTLKGGARMAEVAEVGDLAHELENLYEGLIDRRFNHSPTLAELLHESHDHLAILLEQLYRQEALSDPSAL IEALRSCRTLESAGPEAQASPAASEDPPEHDTELREVFLEEGFDIMESSGAALARWQADPHNMLEVENLLRDLHTLKGGARMVEIAPIGDLAHELETLYE GLSAGSLQPAPLMMGLLQSGQDVLADMLDAVRSDKPLPDATLLIESIRRLATDEPSGAVLAAQGLEIHPESVVAVAPVAEGEVERSGPEMVKVPAEQLED LVNLAGETSIFRGRIEQQIIDSQIALVEMETTIERMRDQLRRLDMETQGRILSREQVQAERLGYEEFDPLEMDRHSQLQQLSRALFESASDLMDLKETLG ARARDAETLLSQQARVNTQLQEGLMRTRMVPFERLVPRLRRVVRQVASELHKKVHFEVGNADGEMDRNVLERMVAPLEHMLRNAVDHGLESTEKRIAAGK PEQGHISLELMYEGGDMVIELSDDGSGVDLAAVRRKAIKRGMIHPDADLSDHEVLPFILQAGFSTSEIITQISGRGVGMDVVHAEVKQLGGSMVIDSVPG QGTRFRIRLPISVSVNRALMVTCGEEQYAVPLNTVDGIVRVMANELDGYYQTTPPRYQYGGRSYELRYLGELLGSSPPRLAGQLQPLPVLLVHLQDQWVA VQVDALAGSREIVVKSLGPQFSRVQGISGATILGDGQVVLILDLMAKIRTLQGLPLRGGMAPAYHEAEHARPLLVMVVDDSVTVRKVTSRLLERHGMHVL TAKDGVDAMTLLQEHTPDIMLLDIEMPRMDGFEVASQIRQDEQLKELPIIMITSRSGQKHRDRAMAVGVNEYLSKPYQETVLLESIAYWSPAHV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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