Pseudomonas syringae DSM 10604, PSSR_RS0105370
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAAGGGTGTTATGAAAACGGATGGCGGTATGTTGGAAATGTCCCGTATTCGTGGGGGTGATGTATACGATAGCCAAATTTATAATATTGAGAGATTAAAA AAATAGGGTATTGATGGGGGCTACACAAAAAGCTGATATGCTCACTGTTAATACCGTTCTTGGGAATTGAGCCTGCCTGTATATAAACTAAATCATATCG GTTTGCTTTACCCAATATCGTGCGCTAGCCGGGAACAAGGGCACAGGTTCTCGGTAATGCGTCGGGTGTCGGTCAGCTTTCGTAGACAAGCCCACCCTCA TGGCAATGTTGCCGGGCCTATACCTGCAATTTTTGAATCAGCTTCCAAAGACCTGCCTGGTTTATTTCAAGGCAGGTCCTCTTTTCAAACTCCTGCAAAT AGCGCCTCCAATGAACCCTCCCTCTCGCATACAGTCGCATACTCACGCTATTCTCTCGCCCTGATCACGCCCGCATCCGGCAGTTGCACAAGGAGTCTGC
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| DNA Sequence for Gene |
>PSSR_RS0105370
ATGCCCGTTCGACTTTCAAGACTGGTTACGTTCGTTCTGGCCGCTGCATTGGCGTTACTGGCCGGTTGTGGCGAAGAAAAGCCTGCCGCGCCCGAGCTGC CCAGGGTTTACGTGCAAACGGTAAAAAGCGCCGACTTTGCTGCCAGCGTTGCGCTGACCGGCGATGTTCAGGCGCGCGTGCAGACCCGCCTTTCATTCCG GGTCAATGGCAAGATCATTCAGCGCAATGTGGATGTGGGTGACCGGGTAACTGCGCGGCAAGTGCTGGCCCGGCTCGATCCGAAGGATCTGCAGACCAAT GTCGATTCGGCCGCTGCTGCTGTGGCTGCCGAGCAGGCCCGCGTGAATCAGGCCAGCGCTGCGTTCGTCCGACAACAAAAGTTGTTGCCCAAGGGTTATA CCAGCCGCAGCGAATATGACTCTGCGCAGGCTGCCTTGCGCGGCAGCGAAAGCTCGTTGAAGGCGGCGCAGGCGCAATTGGCCAATGCCCGTGAACAACT GGGTTATACCGCGCTGGTCGCCGATGCGCCGGGTGTGATCACCGCGCGTCAGGCTGAGGTCGGGCAAGTGGTGCAGGCCACCATGCCGATTTTCGATCTG GCGCGCGACGGTGCTCGCGATGCCGTGTTCAATGTCTACGAGTCGCTGTTCGTCAAGCCGCCGACCAATCAGGCTGTGCAGGTCACGTTACTCGATAACC CGAACATCAAGGTCAGCGGCAAAGTGCGCGAAGTGACCCCGGCGGTGTCGGCGCAAACCGGCACCTTGCAGATCAAGATCGCTCTGGACCCGCTGCCTGA AGGCATGGACCTGGGTTCGGTGGTCAGTGTGGCGCTCAGTGCGCCGGCCAATGCCAGTGTCGAGTTGCCTTGGGCGGCGCTGACCAAGGACCTCGGCGAA CAGTTGGGCAAGCCTGCCGTGTGGGTGGTGGACGAGCAGGGCAAGGTCAATTTGCGCAAGGTCACCGTCACCCGTTACCTGACCGCCAAAGTCATCATTG GCGACGGACTCAAGAGTGGAGAGAAAGTCGTGGTGGCAGGCGGACAGTTGTTACACCCGGACATGCAGGTCGAAATTGCCGAACAGCCCAAGCAACCGAA CGCACAGGTGCAGCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGTCTGTCATGCCTGCCGCTGGGCGGCCTGCTGTTGAGCGGTTTTCTATTGAGCGGCTGTGGCAAGGATGAAACACCTCCCGAGCCGGTGCGCCCCGT CGTCTTCGTCGAAGCAAAGCCTGAGTCGAATCAGGATTTCGGGCGCTTTGCCGGCAATATCCAGGCGCGTTATCAAAGTGTGCTGGGCTTTCGGGTGGCG GGTCGCATCGCCCGGCGCGACGTTGACGTAGGCGCTGAAGTCAAGAAAGGCGATTTGCTGGCAACCCTCGATCCGACCGATCAGCAGAACGCCGTGCGTG CCCGGCAGGGCGACCTGGCCAATGTGCAGGCGCAGTTCATCAACGCCCAGGCCAATGCTCGCCGCCAGCAGGAGCTGTTCGATCGCGGTGTCGGCGCCCA GGCGCAACTGGACATCGCCCTGACCGATCTGAAGACCGCCAGCTCGTCGCAGGAACAGGCCAAGGCCGCGGCTCAACAGGCCCGCGATCAATTGAGTTAC
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| Amino Acid Sequence |
>RND transporter
MPVRLSRLVTFVLAAALALLAGCGEEKPAAPELPRVYVQTVKSADFAASVALTGDVQARVQTRLSFRVNGKIIQRNVDVGDRVTARQVLARLDPKDLQTN VDSAAAAVAAEQARVNQASAAFVRQQKLLPKGYTSRSEYDSAQAALRGSESSLKAAQAQLANAREQLGYTALVADAPGVITARQAEVGQVVQATMPIFDL ARDGARDAVFNVYESLFVKPPTNQAVQVTLLDNPNIKVSGKVREVTPAVSAQTGTLQIKIALDPLPEGMDLGSVVSVALSAPANASVELPWAALTKDLGE QLGKPAVWVVDEQGKVNLRKVTVTRYLTAKVIIGDGLKSGEKVVVAGGQLLHPDMQVEIAEQPKQPNAQVQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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