Pseudomonas syringae DSM 10604, PSSR_RS0104900
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATGTACTGCTTTACCTACCTGAAGACGTGAGCAATCCGAATCGGTCGAGCCAGGTCGTGGTGCCTGCCCTGCGGATTCTCGGCGTTGGCGCGCTGCTCG GTCCGGACCGCAACGGCAAGCCGGTGCAGGACCTCAACGCTGACGAACGCCTCAAACAGGAGCAGCAGCGGATCAACGCGCGAACCGTCACGGTCGCGGT GCCGCAAGCCCTGGTGGCGCGCCTGATGCTTGCGTCGCAAACCGGTGTGCTGCGTCTGGCCGTGCGCAGCGCCGACGAGGGCAACCTGCAGGATTACTGG GCCAACGAAGCCGGCGGCCCAGAGGCTGCCGAGCGACTCGATTCAGCCAACCGCCAACTGGTCAGCTTCAGACAACTGAGCCTGGGGCCGGCCAGCGCGC CAACAGCAGGCGCAACCCCGCGTACGTCTCGCGCTGTCGAGGTCATACGCGGTAACCAGATCACGCAACAAACTCCCTGATTGAGCAAGGATTGCATTTG
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| DNA Sequence for Gene |
>PSSR_RS0104900
ATGAGCTGTTGTTCCGTGCCAGTTATAAAACCCCGTTTGCTGGCGTTAGTCATCGCAGCACTGTGCGCACCAGGCGCGTGGGCCGCTTCGGGCAGTTGTG CCGGCCTAGCCGCGATGCCGGCGGCCGTGGAAATCGACCAAGGCATTCAACAGGAGGTCCGCTCTGCGGTGCCCATCACCCGCATCGCCGTGGGTGATCC GAAAATCGCCGATGTGCATGTCAACGGCACCGACGGTTTTCTGTTGACTGGCGTCGCGCAGGGGACGACCAGCCTGATGGTCTGGACGGCCTGCGCAAGT ACGCCGCGCCAGAGCATGGTCTTCGTGCGTGGCCGGGCGACGACCGCCATGGTCGAGAGTGTCACCGCGCCGTCTGCCGATGCGCAGTTACCCAGCCAGG TGCAGACTGACATCCGCTTTATCGAAGTCAGCCGCACCAAGCTCAAGGAGGCCAGCACCTCGATCTTCGGCAAAGGCTCGAGCAACTTTCTGTTCGGCGC GCCCGGCACGGTGCCGGGCGTCAACGTCACACCTGGCGCTGTGGGCGGCATAACGCCGAGCATTCCGCTGAACAACAGCAATTTCAATATCGTCTGGGGC GGTGGCAGCAGCAAGGTGCTGGGCATGATCAATGCCATGGAAAACAGCGGCTACGCCTACACCCTGGCACGCCCCAGCCTGGTCGCCCTCAACGGGCAAA GCGCGAGCTTCCTGGCCGGCGGCGAATTCCCGGTGCCGGTGCCCAACGGCGAAGGCAACGGTATCTCCATCGAGTACAAGGAGTTCGGCGTGCGCCTGAC CCTGACCCCGACTGTCGTGGGCCGGGACCGGATTCTGCTGAAGGTCGCGCCGGAAGTCAGCGAGCTGGATTTCTCGGCCGGTATCACCATCGCCGGGACC ACAGTGCCAGCGCTGAACATCCGCCGTACCGACACCAGCATTGCGCTTGCCGACGGCGAGAGCTTCGTGGTCAGCGGCCTGATCAGTTCCAGCAACAGTG GTTCGGTGGACAAGTTTCCCGGCCTCGGCGACATCCCGATTCTCGGTGCCTTTTTTCGCAGCTCACAGATCCAGCGCGACGAGCGCGAACTGCTGATGAT CGTCACTCCGCATCTGGTCCAGCCACTGGCCGCCAACGCCCGGCTGCCTTCGCTGCCGGGTGAGGGGCTGCGCACCTATGACCCGAGCTTCCCGCGTCTG TATTTTCTGGAAAACGGCGATTTCGACCGCCGCGACGGGTTATCCAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCAGAGCCTGAGCCAGACCTTCCTGGCAATCACCCGTAACAATACCGATCTGGAGTGGCTGCAAAGTGCCTTAGGTTCGTTGGGCCAGGTGGTCAGTGC CGGTACGGGCAGCCTCGACGACCTGCTGGCGCTGGTGGACGTGACGTTCGCCAGCGTGGTGTTCGTCGGCCTGGACCGTGAGCATTTGATGACCCAGAGC GCCCTGATCGAAAGTGCGCTGGAAGCCAAACCGATGCTGGCCATCGTTGCGCTCGGCGATGGCATGGATAACCAGCTGGTGCTCAATGCCATGCGCGCCG GAGCCAGGGATTTCGTTGCCTATGGCTCTCGCTCCAGTGAGGTCGCCGGCCTGGTCAGACGTCTGAGTAAGCGCCTGCCCGCCGTGACGCCCAACCCGAA CATGAGCGGCCTGTCGGTGCTGTATGGCGTACAAAGCGATGACGACGGGGCCTTGATCGCGACGCACCTGGCGATGGTCGTGCACAAGAGCGGGCAGCGC
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| Amino Acid Sequence |
>secretin
MSCCSVPVIKPRLLALVIAALCAPGAWAASGSCAGLAAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACAS TPRQSMVFVRGRATTAMVESVTAPSADAQLPSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNSNFNIVWG GGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGT TVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPSLPGEGLRTYDPSFPRL YFLENGDFDRRDGLSK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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