Pseudomonas syringae DSM 10604, PSSR_RS0104110
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCTTCAATCGGACATGGCCAAGGTCGGGATCAAGATAGACATTCGCATCATGGAATGGGGCGAAATGCTCAAGCGCGCCAAAAAAGGTGAACATGACA TGGTGTTTGCAGGGTGGGCTGGCGACAATGGCGATCCGGATAACTTCCTGACCCCCAACCTGAGCTGCGACGCGGCCAAAAATGGCGAGAATTATGCCCG CTGGTGCAACAAGGCGTTCGAGGACGCAATCACTCAAGCCCGGAAAATAACCGAACCAGAGAAACGTGCCGCCCTCTATAAGCAGGCTCAACAAGTGTTC AATCACGAACAGCCCTGGATCAGCCTGGCTTACCCGAAACTGTTCGTTGCAATGCGCAAAGATGTCGAAGGCTTTCAAATAAGCCCGCTGACCAATAACA ACTTCACCACTACCAGGGTGAAGTAGAAAAATAATCCGGCGAGCTCATAACCCGAGACTCGCCGGAGCACGCCTAACCGGCTGATGAGGTACACACCAAG
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| DNA Sequence for Gene |
>PSSR_RS0104110
ATGTTTAGTTTTATCGCCCGCCGAGTGGGGTTGCTGATACCCACTTTCTTCGGCATCACCTTATTGACCTTCGCCCTGATTCGTCTGATTCCGGGCGACC CGGTCGAAGTCATGATGGGTGAGCGCCGTGTCGATCCGGAAATGCACGCTCAGGCCATGGAACGTCTGGGTCTGAACAAACCCCTCTACGCCCAGTACAT CGATTACATCGGCAAGCTCGCCCAGGGCGACCTCGGTGAATCATTGCGTACGCGCACCAGTGTCTGGTCCGAATTCACTTCGCTGTTCCCGGCAACCCTG GAGTTGTCGCTGGCGGCGCTGATTTTCGCGGGTATTCTCGGCCTGCTGGCCGGGGTGATCGCCGCCCTCAAGCGAGGGTCCCTGTTCGACCATGGGGTCA TGGGGATTTCCCTCGCCGGTTATTCCATGCCGATCTTCTGGTGGGGCCTGATCCTCATCATGTTCTTCTCGGTAACGCTGGGCTGGACCCCGGTTTCCGG GCGGATCGACCTGCTGTACGACATTCCGCCAGTCACCGGCTTCATGCTGATCGACACGCTGCTCAGTGACGAACAGGGTTCGTTCCTCGATGCCCTGCAC CACATGATTCTGCCGGCCATCGTGCTGGGCACCATCCCGCTGGCGGTGATCGCCCGGATGACCCGCTCGTCGATGCTCGAAGTGCTGCGTGAAGACTACG TGCGTACCGCTCGTGCCAAAGGCCTGTCGCCTGCCCGTGTGGTCTTCGTTCACGGCCTGCGCAACGCGCTGATTCCGGTACTGACCGTGTTCGGTCTGCA AATCGGTACGCTGCTGGCCGGTGCGGTACTGACCGAAACGATCTTCTCCTGGCCGGGTATCGGCAAGTGGTTGATCGAGGCCATTGGCGCCCGGGACTAC CCGGTCGTGCAAAACGGCATTCTGCTGATCGCCTGTCTGGTGATCCTGGTCAATTTCGTGGTGGATATCCTCTACGGCTTTGCCAACCCACGCATTCGTC ACCAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATCATCGATATGAGCACCCCTACTCCTGCGGTAGCAGTCGATCAAAGCCTGCTTTACCCATCCCCGTACAAAGAATTCTGGCAAGCCTTCTCGAAAAAC AAAGGCGCGGTTGCCGGTCTGATGTTCATGACCCTGATCGTGTTCTGCGCCCTGTTCGCGCCGTGGGCTGCCCCCCATGACCCGAGCGAGCAATACCGCG ACTTCCTGCTGACGCCGCCGGTGTGGCTCGAAGGCGGTCAATGGCAATTCATCCTCGGCACCGACGAACTGGGCCGCGACCTGCTGTCACGCCTGATCCA GGGTTCGCGCCTGTCGCTGCTGATCGGTCTGGCATCGGTGGTCATGTCGCTGATCCCCGGCATTCTGCTGGGTCTGCTGGCGGGCTTCTTCCCTCGCGTG CTCGGCCCTTCGGTCATGCGCCTGATGGACATCATGCTGGCCCTGCCCTCGCTGCTGCTGGCTGTGGCCATCGTGGCGATTCTCGGCCCTGGCCTGATCA
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| Amino Acid Sequence |
>peptide ABC transporter permease
MFSFIARRVGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYAQYIDYIGKLAQGDLGESLRTRTSVWSEFTSLFPATL ELSLAALIFAGILGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVTLGWTPVSGRIDLLYDIPPVTGFMLIDTLLSDEQGSFLDALH HMILPAIVLGTIPLAVIARMTRSSMLEVLREDYVRTARAKGLSPARVVFVHGLRNALIPVLTVFGLQIGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY PVVQNGILLIACLVILVNFVVDILYGFANPRIRHQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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