Pseudomonas syringae DSM 10604, PSSR_RS0103500
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGTGGAAACTTCTGCGCCCAGCGCCTTGAGACGTTCGACCAGCATTGCGCTGACGGTCTTCAGCCCGGTTGCCTGGCCGGTGCCTGTGTCGATATCGAC CAGTTGCCGGACCGTGTCGAGGTAGGCCGGTTGTTCGGCCTGGGCTTTTTTCAGCAACTGATCGGGCGACAGTTCGGCGGCGCTGGCAGCCATGGAAAAC AGGCCCATTGAAGCCAGGGAAAGTCCGATTGCGGCAGTGATGGGGAAGCGTCGTGAATGCATGCTGGTTCCTTCAGATGATCGCGAGTTGAACAGCATCT TTACCCCAATGCGTTGCTCGACGCCACAGGCGAGGCTCGTGCAACAAATATGTATGAGGATGTAACTGAGAGTGATTAGCATTTAATTAAATATGAAAAA GTTGTTAGTCTCGCCCCGCCGCTGCCCGTCACCCCGGTCGAGAGGCGCGTCCTCTGCCAGATGTATCACCACGTCCTCAGCCATTGCAGGAATGACCCTA
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| DNA Sequence for Gene |
>PSSR_RS0103500
ATGCTTCGTCCGTTTCCCCCTTCGCTGACCGGTCTTGTAGTCCTTGGGCTTTCAGCCGCCGCAGTGGCAGCCCCCGTCCAACTCGATCTGCCCGCACAGC CGCTCTCCAAATCGCTGACACAACTGAGTCAGGCAAGCGGCCTGCAGATATCGGCTGATGACTCCCTGATTGCAAGCAAGCAGGCCCCGGCTGTAAGAGG CAGCCTGGAACCGGCTCAGGCACTGAGCCGACTGCTGCTGGGCAGCGGCCTTGACGCCCAAGTGCAGGGCAATGCCGTGAAGGTATTCCAGCCAGCCAGT AATGGCCCCATGACGCTGGGCAACGTGGATATCAGCGCTCAAACGGGAATCGCTGGAATGGCCACTACAGAAGGCAGTGGCTCGTATACGACCGGCTCGA TGAGCAGCGCGACCAGGCTGCCCCTGTCGATTCGCGAGACGCCGCAGTCGGTGAGCGTGATCACCCGCCAGCGCATTGAAGATCAAGGCATGAACGACCT CAATGATGTCGTCAAATATGCACCCGGCGTGACGCTGCGCAAGTTCGGCTCGGACCGTCAGCAATTTCTGGCGCGCGGCTTTGCCATCGATAACCTGATG TATGACGGTCTGCCGACAATCGTCAGTACCTTTACACTGGACACCATTTCCGGTGCCGATCTGGCCCTGTACGACCGCGTCGAGGTGGTGCGCGGGGCGA CGGGGCTGATGACCGGTGCGGGCAGTCCATCGGCGACGCTGAACCTGATCCGCAAGCGTCCCACCACGACTCCGCAAGTGAGCGTGACCACCAGTGCAGG GAGTTGGGACCGTTACCGTACCGAAGTGGACGCGTCGAACCGGCTCAACGATTCCGGTACGTTGCGCGGCCGGGTGGTGGCGGCCTACGAAACGGGCAAC AGTTTTGTCGATGAGCGCGATAAAGAGCGCCAGACGTTCTATGGCGTGCTGGAAGCCGATCTCAGCGAATCGACCACCTGGACCATCGGCGCCTCGAGGC AGCGCGATGACGCGACCTCCGACTGGGGCAGCCTGCCATCCGGTCCGAACGGCGAGAATCTTGACCTGCCACGCTCGACGTTCCTGAGCAACGACTGGGC CTACTGGGACAGACACAACGTCAGCCTTTTCACTGACCTGACCCATCATTTCGACAACGGCTGGAGCAGCAAGCTGGCAGCGACCAGAATCTGGGCGGAG TCCGACATGTACTCCAACTACCTGACCGCCAACGGCACCGGCTACGGCCAGGCAGCCGGCCAGTACGACACCACGGATGTGCAGACCAGCCTCGACGGCT CACTGTCCGGCCCGTTCCAGCTGTTTGGCCGAGAGCATGAGGTGATGCTCGGGGTCAGTCGTCGCGAAGAGAAGTTCGATCAGAAAGGCGGCTTCTACGG CTCCACGCCAATCGATATCCATCACTTCAATCCCAACGTGATTGCAAAGCCAGACCTTGCCACGCGCACGGCCTATGTCAGCCAGAACACCGCCACCGAG GAAGGCGTCTACGCTGCCGCGCGTTTCAACCCGATTGATCCGTTGCACCTTATCGTCGGCAGCCGGGTGAGCTGGTACGACTACCAGAATCGTTCGGCCA ATAATGGCGACTACAAGGTCATCCGCGAAGTCACGCCCTACGCCGGTGTTGTCTATGACCTGAACGACACCTACTCGGCCTACGCCAGCTATACCGAGAT TTTCAAGCCGCAGAATCAGCTGGACGTGGGGGGCGGCGTGCTTGACCCGATGACCGGCGAAAGTTATGAAATCGGTCTGAAAGGCGAATACTTCGACGGC AGCCTGAATGCCTCGCTGGCAGTCTTCGACATGACCCAGGAAAACCGCGCGTATGCCATCGTCAACCCGCCAGCCGCCTGCCAGCAGCAAAATCGCGTCT GTTACGAAGCCGCCGGGGAAGTGCGCAGTCGAGGTATCGACGCAGAAATAACCGGCCAACTGACACCTGACTGGCAGGCCTCCGCTTCCTACACATTGGT GTTGAGCCAGTACGTCAAGGACCGAACCAATGACAAGGGCGACCTGTTTGCGCCCAATCAGCCGAAACACCTGTTCAAGGCAGCGACGTCCTACCACCTG CCCGGCAACCTGAACAAATGGCGCGTGGGTGCAGATGTCCTGGCACAAAGCGAGACGTACAACCGGGTCGGCAACGGTCACTCCGTGCAGGATGCCTATG CGGTCGTGGGGCTGATGGCAGGCTACCGGTTCGACGAGCACTGGGACGCGCGGGTCAATCTCAACAACGTATTCGACGAAAAATACTGGCAAGGCATTCC GCTGGCAACCGGCAGCGGCGTTTACGGTGACCCGCGCAACCTGATGGTCTCGCTGAAGTGGTCGCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACCTGCAGCGTGCAGGCCGCTCGGCAGAGGTTAAATTCATATCAAGGGAACAAGCAGTCGGTGCGAGGCTCAAAAACAGTCTAGACAAAGGTATTCACG ACAATGCCGTCCCTCAGGGCCTATCATCGGCAGCAGTAAACGCTGCGGCCTTGAGTGGTCGGCAGCGCTCGGGTAATGTCATCCAACCGCACAGGACAGA GCACGCTCATGACTTCCAAGCTGGATCAACTCAAGAAATTCACCACCGTTGTTGCTGACACCGGCGACTTCGGCGCAATCAAGAGCCTCGAACCCGAGGA CGCCACCACCAACCCTTCCCTGCTGCTCAAGGCCGCTTCCGACGCGAACAACGCCAAGATGCTGGGCAAAGCGTTCGACGGTAGCAAGGGCGACATCGGC CTGGCCTGCGACCGTTTTGCAGTCGCCATCGGTCAGGAAATTCTCAAGGTGGTTCCGGGTCGCGTATCCACTGAAGTGGATGCACGCCTCTCCTTCGACA
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| Amino Acid Sequence |
>ligand-gated channel
MLRPFPPSLTGLVVLGLSAAAVAAPVQLDLPAQPLSKSLTQLSQASGLQISADDSLIASKQAPAVRGSLEPAQALSRLLLGSGLDAQVQGNAVKVFQPAS NGPMTLGNVDISAQTGIAGMATTEGSGSYTTGSMSSATRLPLSIRETPQSVSVITRQRIEDQGMNDLNDVVKYAPGVTLRKFGSDRQQFLARGFAIDNLM YDGLPTIVSTFTLDTISGADLALYDRVEVVRGATGLMTGAGSPSATLNLIRKRPTTTPQVSVTTSAGSWDRYRTEVDASNRLNDSGTLRGRVVAAYETGN SFVDERDKERQTFYGVLEADLSESTTWTIGASRQRDDATSDWGSLPSGPNGENLDLPRSTFLSNDWAYWDRHNVSLFTDLTHHFDNGWSSKLAATRIWAE SDMYSNYLTANGTGYGQAAGQYDTTDVQTSLDGSLSGPFQLFGREHEVMLGVSRREEKFDQKGGFYGSTPIDIHHFNPNVIAKPDLATRTAYVSQNTATE EGVYAAARFNPIDPLHLIVGSRVSWYDYQNRSANNGDYKVIREVTPYAGVVYDLNDTYSAYASYTEIFKPQNQLDVGGGVLDPMTGESYEIGLKGEYFDG SLNASLAVFDMTQENRAYAIVNPPAACQQQNRVCYEAAGEVRSRGIDAEITGQLTPDWQASASYTLVLSQYVKDRTNDKGDLFAPNQPKHLFKAATSYHL PGNLNKWRVGADVLAQSETYNRVGNGHSVQDAYAVVGLMAGYRFDEHWDARVNLNNVFDEKYWQGIPLATGSGVYGDPRNLMVSLKWSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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