Pseudomonas syringae DSM 10604, PSSR_RS0101545
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGTTGTCACAAAGCGGGCAGACCATTCGCATCACCAGTCCGGTGCGTTGGGTGGTGGGCTTCAACTCGTTCGATCTGGCGCAGTTTCGCAAGGTCATCAA AGACCCGAATCGCAGCAGCGCCGAGCTGTATCGTTATGTAGTGCATTATCTGGTGCTGTTCTACTGCCTGAGCAAGTCGCCGGGCATGAGCCGCCTGTTC GAAGGGCTGCGCTTCCCGGTCAGTTTCGAGCGATTGAAAGACTTCGGCGACCTGCCGTTCTGTGTGATCAGCTCGCCAGTGCGCTCAGAATTACCGGATG AATCGGTGATTCGCAACAGCACGCAGATCGCAGGCAATACCAGTTTCGAAGAATTGGTCGGACACGAAAACATTCTGGAAATGAACGATGAAATCCGTCA GCGTCTGCTGCTGACGATTGAAGGACTCTAATCGCGCCCGGCCCGCCACAGGCCCGGTACGCAAACGACTTGCAGCGAGTTGCTCGCACAGGAGATGACG
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| DNA Sequence for Gene |
>PSSR_RS0101545
ATGGCGAAGAAGGAAAGTACCCAGCACAAACTTGACCGCGTTCGCGCGCCTCGGGTCCACATCACTTACGACGTGGAGATTGGCGATGCTCAGGAAAAGA AAGAGCTGCCATTCGTTGTGGGCGTTATGGGCGATTTCTCCGGCAACCCGCTGGAGCCGCTGCCCAAGCTCAAGGATCGCAAGTTCATCTTCATCGACCG CGACAATTTCAACGGCGTCCTGAAAGGCATCAAGCCGCGCCTGGCGTATCGCGTCGACAACACCCTGGCAAAAGACGGCACCCAACTCGGTGTCGAGCTG AACTTCAATGCGCTGGAAGACTTCGAGCCGCAGAACGTTGTGCGTCAGGTCGAGCCGCTCCGCAAGCTGCTGGAAGTGCGTAACAAGCTGGCTGACCTGC GTAACAAGATGGGTGGCAACGACAAGCTTGAAGAGCTGCTGATGGACGTGTTGCAGAACACTGAAAAGCTGAAAACCCTGGGCAAGGAATTCGGCCGTGA AGCCGCCGTCCCCGCCACCGACAGCAAAGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAGGAGCCTGACGATGACCGATAAGCAACCCGTGACTCAGCAGGACAGCGCTCTGGTTGAAGTTGAAAACTTCGCCCCGCAATCTTCCTTGCTCGACAG CATCATTTCCGAAAGCCGCGTTGCACGCTCCGAAACCGAGCGCACCCGTACCCGCGATCTGATCGGCGAACTGGTGGCCCAGGTACTTGAAGGCGAGATG ACGCCAAGCAAGGACCTGATTGCCGTGCTCGACGCGCGCATCGCCGAGATCGATTCGATGCTCTCCGAGCAAATGAACGAAATCATGCACGCCCGTGAGT TCCAGCAACTGGAAGCGTCCTGGCGCGGCCTGAAATATCAGGTTGACCAGACCGAGACCAGCACCACGCTGAAGATTCACCTGCTCAACGCGTCGAAAAA AGACCTCGTGCGTGACCTCAAGGCGTCGTCCGAATTCGACCAGAGCGCACTGTTCAAGAAGATCTACGAAGAAGAGTACGGCACCTTCGGTGGCGCGCCG
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| Amino Acid Sequence |
>type VI secretion protein
MAKKESTQHKLDRVRAPRVHITYDVEIGDAQEKKELPFVVGVMGDFSGNPLEPLPKLKDRKFIFIDRDNFNGVLKGIKPRLAYRVDNTLAKDGTQLGVEL NFNALEDFEPQNVVRQVEPLRKLLEVRNKLADLRNKMGGNDKLEELLMDVLQNTEKLKTLGKEFGREAAVPATDSKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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