Pseudomonas sp. URHB0015, N526_RS0128185
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00017.17, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCCATCCGCCCCAGCGGCAGGCCGGCGATCGCATACACCAGGGTGAACGCCGTGCCAATGATCCCCAACTGGAAGTCGCTGAGGTGCCACTCCATGCG GATCGGTTCAATAATGATGGCCGGTATCGTGCGATCGAAGAAGTTGAACAGATTGGCCAGGAACAGCAGGAACAGAATGCGCCAGGCATTCGCCGCTTGG GTCGAGTTCTGCATGGGGTCCGTCTCGTCTATTTATTGTTATGAGGGCTCCGCCACCACGCGCATACGAGCCCGGAATCCGCAATCTAGTCAGGCCCGAG ACGGCTGTCTGTCATTATTCGCCAGGGTGATAGGGGCCTATGGCAAGTGCTCGAGCAAGTCGCCTGCCTTATTTCCAATCGCAATAAAATCAATTCAAAA ATATTAAGAGGCAATGCGCCACTATCCAGTGCACGCTGTGCACGGTCTCTATACTCAAGCCATTGGCCGGCACCCAGGCGGCGTAAAGACGAGGGATGCT
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| DNA Sequence for Gene |
>N526_RS0128185
ATGGATTGGCTGCGCTTTACCAGCGAGCTGCCGCAGAGCAGCGGTTATGTCGTACTCGACTGCAGCTACAGCACAACGCTGGTACTGCTGGCCTATCTGG TTGCCTGCGCAGCCAGCTTCGCAACGCTCGACATGGCCGAGCGGGTCAGTCACGCCGAACATCCAGCCTCAAGGCGGCACTGGCGTTGGGCGGGTGCCGG GTGCCTGGCCGGTGGAATCTGGGCCATGCACTTCATCGGCATGCTGGCCTTCCTCGCCCCGATCAACCTCCACTATGACCTCCCCATCACCCTGCTTTCG CTGCTGATCGCCCTGATTGCCGGCGTTCTGGCCATGAATACCCTGAGTGCTGCACGGCTCGGCCCATGGCGCCATGGGCTAGCCTCGATCGGTGTCGGCC TGGGCATCGCCACCATGCATTACGTGGGCATGGCTGCCATGCATTCCGACGCCAGCCAATACTTCGAGCCTTGGCTGTTAGCCCTGTCGATTGTGATCGC CATTGTTGCCAGCGGCATCGCCTTGCTGCTCTGGGACCTGCTGCGCGATGGCAGCGGTGTCTTCCATCAGACGCTCAAATACCTCACCAGCCTGATACTG GGCGCCGCCATTGTCAGCATGCACTTCACTGGCATGTGGGCAATGACGCTGGTATTACCCGAGAGCATGCCCGTCCAACCGGCCTCGGACGACAACCAAC TGCAATTGGGCATGACCATTGCCGTGATTGCCTTGCTGGTGATCGGCAGCACCATCAGCGCCGCCTTGGCCGACAAGAAATTGCAGCTCAAGGAACATGA CCTGCAACGGGTCCAGGCCCTGCTCGGCCAACTCGACCAGGCACGGATGTCACTGCAACAAGCCGCGCATTACGACAGCCTGACCAACCTGCTGAACCGG CGCGGTTTCAATCAGCTGTTCGCGGAGAAAATCGTCGAAAAAAGCGCCCACGGCGGCAAGCTGGCGATCATGTTCCTGGACATCGATCATTTCAAACGGA TCAACGACAGCCTCGGCCACGATGCTGGCGACGACTTGTTGAAGATCCTCGCCGGACATCTCAAAAGCTCGATACGCAGTCATGCCGATCTGGTCGCGCG GTTTGGCGGTGATGAATTCTGCGTGCTGCTCAACTTGCAGGAGCAGGACGAAGCCCGACATGTGGCGCTGCGCATCCTGGCCAGAATGAAAGAGCCCGTC GCACTGGCCGGCCGCAGCATGGTCATGACCACCAGCATCGGGATCAGCCTGTACCCGGACGACGGCCTCACGTGCGAAGAACTGCTGAAAGATGCCGACC TGGCCCTCTATCAAGCCAAGGCCAACGGCCGCAACGATTTTTGCTTTTTCAATGAAGCCCTGAAGACCAAGGCAACGACCGCCCTGCAGTTAGAGGAGGA ACTGCGCAATGCCCTGCGTCAGGACCAGGGTCTGCTGCTGTACTACCAGCCCATTTACGACCTGGCGACTGGTCAGGTCACCAAGCTTGAAGCATTGATT CGCTGGCAGCATCCGACTCACGGCCTACTGACGCCTGAACGCTTCCTCGCTATCGCCGAAGCCAATGGCCTGATCGCCGAACTCGACCACTGGGTGTTAC GCAAGGCCTGCGAGGACCTCAAGCACTTATCCGGGCCAGGCTGTGACTCGCTGAAGATCGCCGTCAACTGCTCGCCGCTCAACCTCAGCCGACCGGAGCT GGCCGGGCAAATCAAGGCCGCGCTGCAGTCTGCTGGCGTTGCCGCACAGCGACTGGAGCTGGAAGTCACCGAGAATGCGCTGATGGGCAACATCGCCGAA ACGCTGGAGTTATTGCACCAGATCCGCGAGCTCGGGGTATCGCTGTCCATCGATGATTTCGGCACCGGCTATTCCTCGCTCGCGTACCTCAAGCGACTGC CGTTGAATACGCTGAAGATCGATCGGTCGTTTATCCAGGACATCCCCAACTCACCGCAGGACATGGAGATCGTGCAGGCGATCATCGTCATGGCCCACAC CCTGCACCTACAGGTGGTCACCGAAGGCGTCGAGACGCTCGAACAATACCGTTTCCTCGAACGCCTGGGCTGTGACTACATTCAGGGCTATTTACTGAGT TGCCCGGTGCCCCTGGCGGAATTGCGGCCGATCCTCGATCAGGTCAATCAACGCATCAGCCCTTTGCGTCTGGTTCGCGGTACAGCTGAATCAATGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGGATCCTTTTCCAGAAAGCCCTGACCACCGTGCAAACGCATCAGTTGCGCAGCCAACCCACTGAGCGGCGTCGCCGCCCCCTGCTCCCGGGAAAATTT CACCGCGCCATCAAGGTCCTTGAGCAGCGTACGCACATGCCATTTCACCGGTTCGAAGCGACTCTCGGCCATTTGTGGCGCCAGAATCTGCAGGGGTTTT GAATCAGCAAAACCTCCGCTCAGGGCCTCTGCCAGCAAGCTGGCGTCGACACCCGAGCGCTCTGCCAGTGCTACCACCTCGGCGATAACCAGGGCATTGC ACGCCACAATCATTTGATTGCAGGCCTTGGTCACCTGCCCAGCCCCCACCGCGCCCATATGCGTGACCCGTTGACCCAGGTTCAGCAGGATCGGGCGCAC GCGCTGCAGATCGGCGGCCTGACCGCCCACCATGATCGCCAGGCTGCCCGCTTCAGCACCGGCCACGCCACCGGACACCGGTGCATCAAGCCAATCCATC
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MDWLRFTSELPQSSGYVVLDCSYSTTLVLLAYLVACAASFATLDMAERVSHAEHPASRRHWRWAGAGCLAGGIWAMHFIGMLAFLAPINLHYDLPITLLS LLIALIAGVLAMNTLSAARLGPWRHGLASIGVGLGIATMHYVGMAAMHSDASQYFEPWLLALSIVIAIVASGIALLLWDLLRDGSGVFHQTLKYLTSLIL GAAIVSMHFTGMWAMTLVLPESMPVQPASDDNQLQLGMTIAVIALLVIGSTISAALADKKLQLKEHDLQRVQALLGQLDQARMSLQQAAHYDSLTNLLNR RGFNQLFAEKIVEKSAHGGKLAIMFLDIDHFKRINDSLGHDAGDDLLKILAGHLKSSIRSHADLVARFGGDEFCVLLNLQEQDEARHVALRILARMKEPV ALAGRSMVMTTSIGISLYPDDGLTCEELLKDADLALYQAKANGRNDFCFFNEALKTKATTALQLEEELRNALRQDQGLLLYYQPIYDLATGQVTKLEALI RWQHPTHGLLTPERFLAIAEANGLIAELDHWVLRKACEDLKHLSGPGCDSLKIAVNCSPLNLSRPELAGQIKAALQSAGVAAQRLELEVTENALMGNIAE TLELLHQIRELGVSLSIDDFGTGYSSLAYLKRLPLNTLKIDRSFIQDIPNSPQDMEIVQAIIVMAHTLHLQVVTEGVETLEQYRFLERLGCDYIQGYLLS CPVPLAELRPILDQVNQRISPLRLVRGTAESM
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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