Pseudomonas sp. URHB0015, N526_RS0125695
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTTACGTCGGCGAGAACAAGCTGTTCGAAGAGCAACTGCTCAAGGGCGAAATCGAAGTCATCCTGACCCCGCAAGGCACCCTCGCCGAAAAAATGCGCGC GGGCGGCGCCGGCATCCCGGCGTTCTTCACCGCCACCGGCGTCGGCACCCCGGTTGCCGAAGGCAAGGAAGTGCGTGAATTCAACGGTCGCAAATACCTG ATGGAAGAGTCCATCACCGGCGACTTCGCCATCGTCAAAGGCTGGAAAGCCGACCACTTCGGTAACGTGATCTATCGCCACACCGCGCAGAACTTCAACC CGCTGGCCGCCACCGCCGGCAAGATCACCGTGGTCGAAGTCGAAGAAATCGTCGAACCCGGCGAGCTGGACCCAACGCAGATCCACACCCCTGGCATCTA CGTCGACCGGATCATCTGCGGCACGTTCGAAAAACGCATCGAACAACGCACCGTACGCAAGTGATCCCCTGCCCCCGGACCGAATGAAGGAATAACAACA
|
|
| DNA Sequence for Gene |
>N526_RS0125695
ATGGCACTTTCCCGCGAACAAATGGCTCAACGCGTCGCCCGTGAAATGCAGGACGGCTTCTACGTGAACCTGGGTATCGGCATTCCGACCCTGGTTGCCA ACTACATTCCAGAAGGCATGGAAGTCATGCTGCAATCGGAAAACGGCCTGCTGGGCATGGGACCGTTTCCTACCGAAGAAACCATTGATGCCGACATGAT CAACGCCGGCAAACAAACCGTGACCGCGCGCACCGGCGCGTCGATCTTCTCCTCGGCCGAATCCTTCGCGATGATTCGCGGCGGGCACGTCGATCTGACC GTGCTGGGCGCCTTCGAAGTGGATGTGCAAGGCAACATCGCTTCGTGGATGATCCCCGGCAAACTGGTCAAGGGCATGGGCGGCGCCATGGACCTGGTGG CCGGTGCCGAAAACATTATCGTGATCATGACCCACGCCTCCAAGGACGGCGAGTCCAAGCTGCTGGACCAGTGCAGCCTGCCGCTGACCGGCGCCAACTG CATCAAGCGTGTGCTGACCGACCTCGCTTACCTGGAAATCGAAAACGGCGCGTTCATCCTCAAGGAACGCGCGCCAGGCGTCAGCGTCGAGGAGATTGTC AGCAAGACCGCCGGTAAACTGATCGTTCCCGAACACGTGCCGGAAATGCAGTTCGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACTGCCTGCCGCTGAGGAGAAATTCGATGCAAGAAGTCGTGATTGTCGCCGCTACCCGTACCGCCATTGGCAGCTTCCAGGGTTCGCTGGCGAACATCCC GGCGCCGGAACTCGGTGCTGCGGTTATTCGCCAACTACTGGCCCAGACCGGTCTGGATCCGGCGCAGGTGGATGAGGTGCTGCTCGGCCAGGTGCTGACT GCAGGCTCGGGGCAGAACCCGGCGCGCCAGGCGGCGATTCTCGCCGGCCTGCCCCATGCCGTACCGGCCATGACCCTGAACAAGGTCTGCGGCTCGGGCC TCAAGGCCCTGCACCTGGGCGCCCAAGCGATTCGCTGCGGCGATGCCGAGGTGATCATCGCCGGCGGCATGGAGAACATGAGCCTGGCCCCGTACGTGTT GCCGGCCGCCCGCACCGGCCTGCGCATGGGCCATGCGAAGATGATCGACAGCATGATCACCGATGGCCTGTGGGACGCGTTCAACGACTACCACATGGGC
|
|
| Amino Acid Sequence |
>succinyl-CoA:3-ketoacid-CoA transferase
MALSREQMAQRVAREMQDGFYVNLGIGIPTLVANYIPEGMEVMLQSENGLLGMGPFPTEETIDADMINAGKQTVTARTGASIFSSAESFAMIRGGHVDLT VLGAFEVDVQGNIASWMIPGKLVKGMGGAMDLVAGAENIIVIMTHASKDGESKLLDQCSLPLTGANCIKRVLTDLAYLEIENGAFILKERAPGVSVEEIV SKTAGKLIVPEHVPEMQFA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|